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JXB Advance Access originally published online on March 12, 2004
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Journal of Experimental Botany, Vol. 55, No. 400, pp. 1213-1220, May 1, 2004
© 2004 Oxford University Press

Photosynthetic Gene Expression

Chloroplast proteomics: potentials and challenges

Received 24 September 2003; Accepted 19 January 2004

Sacha Baginsky* and Wilhelm Gruissem

Institute of Plant Sciences, Swiss Federal Institute of Technology, ETH Zentrum, LFW E51.1, Universitätstrasse 2, CH-8092 Zürich, Switzerland

* To whom correspondence should be addressed. Fax: +41 1 632 10 79. E-mail: sacha.baginsky{at}ipw.biol.ethz.ch

With the available Arabidopsis genome and near-completion of the rice genome sequencing project, large-scale analysis of plant proteins with mass spectrometry has now become possible. Determining the proteome of a cell is a challenging task, which is complicated by proteome dynamics and complexity. The biochemical heterogeneity of proteins constrains the use of standardized analytical procedures and requires demanding techniques for proteome analysis. Several proteome studies of plant cell organelles have been reported, including chloroplasts and mitochondria. Chloroplasts are of particular interest for plant biologists because of their complex biochemical pathways for essential metabolic functions. Information from the chloroplast proteome will therefore provide new insights into pathway compartmentalization and protein sorting. Some approaches for the analysis of the chloroplast proteome and future prospects of plastid proteome research are discussed here.

Key words: Chloroplasts, mass spectrometry, plant cells, plant proteins, proteomics.


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