Journal of Experimental Botany, Vol. 51, No. 342, pp. 131-138,
January 2000
© 2000 Oxford University Press
Plant responses to sulphur deficiency and the genetic manipulation of sulphate transporters to improve S-utilization efficiency
IACR-Rothamsted, Biochemistry and Physiology Department, Harpenden, Hertfordshire AL5 2JQ, UK
Received 24 February 1999; Accepted 29 April 1999
| Abstract |
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Decreased inputs of S have increased the incidence of S-deficiency in crops, resulting in decreased yields and quality. Remediation by fertilizer application is not always successful because this often results in an uneven supply of S. The ability to respond to S-deficiency stress varies between crops and this is a target for the genetic improvement of S-utilization efficiency. Improved capture of resources, the accumulation of greater reserves of S and improved mechanisms for the remobilization of these reserves are required. It is an inability to over-accumulate S and subsequently, effectively remobilize S-reserves, which restricts optimum S-use efficiency. Genetic manipulation of the transporters and their expression will contribute to overcoming these limitations. Control of gene expression limits excess uptake and activity of the assimilatory pathway: the endogenous expression of sulphate transporters is regulated by S-supply, with negative regulation from reduced S-containing compounds and positive regulation by O-acetylserine, the C/N skeleton precursor of cysteine. Constitutive expression of the transporter will remove this control and may enable the accumulation of sulphate reserves. Sulphate in the vacuole and other pools of reduced sulphur, such as glutathione or protein may be remobilized under S-limiting conditions. Low efficiencies of these remobilization processes, particularly the remobilization of vacuolar sulphate, suggest that the transporters involved in the remobilization are a target for modification. Transporters are involved in facilitating the multiple trans-membrane transport steps between uptake of sulphate from the soil solution, and delivery to the site of reduction in the chloroplast or plastid. A gene family has been identified and phylogenetic relationships based on primary sequence information indicate multiple sub-groups. Groups which are expressed in roots, in shoots and in both tissue types are postulated, however, the functional roles for these groups and the identification of transporters involved in recycling remain to be confirmed.
Key words: sulphate transporter, sulphur, S-limitation, S-inputs, S-mobilization, cereal nutrition.
| Introduction |
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Why is S-deficiency a problem?
In recent years S-deficiency has become an increasing problem for agriculture resulting in decreased crop quality parameters and yields (McGrath et al., 1996
In recent decades considerable progress has been achieved in reducing emissions of S to the atmosphere, which has resulted in a consequent decrease in atmospheric depositions of S onto agricultural land (McGrath et al., 1996
). Whilst these depositions were once sufficient to support crop requirements for S, they now fall well below the recommended requirements for cereal and oilseed crops. Predictive modelling has shown that the occurrence of agricultural land at risk from S-deficiency will increase. Deficiencies are predicted for cereals and are more likely for oilseed rape crops, which have a higher requirement for S (McGrath et al., 1996
). Research into plant adaptation to S-related stresses has shifted from an emphasis on excessive inputs and acidification to the other extreme of how deficiencies are impacting on crop production. This paper will review the effects on plant growth and crop quality associated with S-deficiency and the increased occurrence of this hostile environment. Plant responses to inadequate S-supply will be examined and specific targets for genetic manipulation to engineer S-deficiency stress tolerance are identified. The importance of the sulphate transporters, which have pivotal roles influencing whole plant S-metabolism, will be reviewed.
| Plant responses to S-limitation stress |
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Effects of S-deficiency in plants, symptoms and effects on yield consequences
The agronomic consequences of insufficient S are well documented with decreased yields and a substantial impact on S-content under extreme deficiency (for a review, see Zhao et al., 1999
-gliadin and high molecular weight subunits of glutenin at the expense of S-rich proteins in wheat (Moss et al., 1981
Physiological responses
Sulphate deficiency in young wheat plants has an early effect on CO2 assimilation rates and on Rubisco enzyme activity and protein abundance (Gilbert et al., 1997
). This is a result of decreased synthesis of new protein under S-limiting conditions and, additionally, some degradation was observed in response to S-limitation in the older leaves. The lack of synthesis of Rubisco and the chlorosis of the young leaves due to decreased chlorophyll content (Burke et al., 1986
), reflect a general inhibition of de novo synthesis of the photosynthetic apparatus.
Another metabolic effect of S-stress is a depression of the root hydraulic conductivity (Karmoker et al., 1991
), an early response which may have a role in signalling nutrient starvation from root to shoot. It is proposed that stomatal closure restricts CO2 uptake, limiting carbon assimilation and thus restricting the metabolic need for S.
An obvious indication of S-deficiency is the reduction in the internal S pools (see below), but additionally there are rises in soluble nitrogen pools including nitrate and amides as a consequence of the N : S imbalance (Karmoker et al., 1991
; Zhao et al., 1996
; Prosser et al., 1997
; Warrilow and Hawkesford, 1998
). These metabolite fluctuations have been proposed as possible diagnostic indicators of S-deficiency (Zhao et al., 1996
).
Storage and remobilization
Several distinct pools of S occur in plant tissues, with the most occurring as sulphate or in the protein fraction. The relative abundance of these two fractions depends upon the specific tissue and the previous nutritional history of the plant (Blake-Kalff et al., 1998
). Other smaller pools include free amino acids, cysteine and methionine, the tri-peptide glutathione, sulpho-lipids and other secondary compounds such as the glucosinolates found in the Brassicaceae. If present, the most significant and readily mobilized form is sulphate. Whilst cytoplasmic concentrations of sulphate are kept relatively constant, sulphate taken up by the plant, which is surplus to immediate requirements for growth, is stored in the vacuole. Reports on the effectiveness of mobilization of this vacuolar sulphate pool vary, and may reflect species differences or the ability of the remobilization processes to keep pace with growth rates. The mobilization of this vacuolar pool has been reported to be a slow process in roots (Bell et al., 1994
, 1995a
) in mature leaves (Bell et al., 1995b
), and particularly so in oilseed rape (Blake-Kalff et al., 1998
).
The patterns of S-accumulation and redistribution in Brassica napus have been described recently in detail (Blake-Kalff et al., 1998
). When supplied with adequate S, the concentrations of glutathione and glucosinolates accounted for 2% and 6% of the S-content in the youngest leaves, respectively. In the older leaves these compounds accounted for an even smaller proportion of the total S, and it was concluded that they are not major reserves of S during deficiency. The concentration of insoluble (protein S) was similar for all leaves (around 50%). In the mature leaves 7090% of the total S could be accumulated as sulphate. If S-supply was withdrawn, these pools all decreased, although the decrease in concentration could be accounted for mainly by growth. There was little evidence of the large reserves of sulphate being redistributed to the younger growing parts of the plant. This inefficiency in managing S-reserves is suggested to be part of the reason for the high S requirement for oilseed rape crops.
Pulse-labelling experiments have investigated fluxes of sulphate in barley (Adiputra and Anderson, 1992
, 1995
). These studies demonstrated redistribution of sulphate, but showed no evidence for enhanced redistribution stimulated under S-limiting conditions. In soybean, the greatest redistribution of S occurs when N-limitation induces proteolysis (Sunarpi and Anderson, 1997
). Studies on the remobilization of S in the flag leaf and delivery to the developing grain of wheat indicate that when there are adequate reserves of sulphate, this can be remobilized to the grain (MJ Hawkesford, unpublished results). Plants grown on an adequate S-supply (1.0 mM sulphate in the nutrient solution, applied on alternate days) until anthesis when the supply of S was terminated, were able to maintain the S-content of the grain at near control levels (S-supply maintained after anthesis), at the expense of S-pools in the flag leaf. This was in contrast to plants grown with a sub-optimal S-supply, with for example, 0.1 mM sulphate in the nutrient solution, where little S-accumulated in the flag leaf and grain contained substantially less S than the control plants.
| Sulphate transporters and the S-assimilatory pathway |
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Sulphate transporters and metabolite control of expression
Prior to identifying targets for genetic manipulation it is necessary to understand the biology of sulphate uptake and assimilation in higher plants, and to have cloned the genes encoding the relevant components. In recent years genes or cDNAs encoding sulphate transporters and enzymes of the assimilatory pathway have been cloned. Identification of these genes has enabled the resolution of long-standing controversies concerning the components of this pathway and a generally accepted pathway is shown in Fig. 1
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As shown in Fig. 1, control of flux of S is proposed to be by both allosteric regulation of enzyme activity and regulation of levels of gene expression of components of the pathway. The most highly regulated components are the root-expressed transporters (Smith et al., 1995b
Sulphate after entering the cell is first activated by ATP sulphurylase to APS, which is then reduced by APS reductase and sulphite reductase to form sulphide, which is then incorporated into cysteine catalysed by the cysteine synthase complex. The cysteine synthase complex comprises two component enzymes, the OAS-thiol lyase which catalyses the conjugation of sulphide with O-acetylserine (OAS) to form cysteine, and serine acetyl transferase (SATase) which catalyses the acetylation of serine by acetyl-CoA to form OAS. Provision of serine is dependent upon adequate C and N metabolism, and this point of convergence of the assimilatory pathways represents an opportunity for the co-ordination of S-assimilation with C and N metabolism. The OAS-thiol lyase is present in excess compared to SATase and it has been suggested that only when in this complexed state is the SATase fully active. The presence of high levels of OAS can act to disrupt this complex and limit further OAS synthesis (Hell, 1998
). An additional cysteine allosteric feedback loop prevents excess cysteine being formed in the cell when both serine and sulphide are abundant.
A model to control expression of the genes for the sulphate transporters and components of the assimilatory pathway such as APS reductase (Takahashi et al., 1997
) and possibly other components of the pathway is outlined in Fig. 1. In the model, metabolic intermediates of the pathway are the first components of signal transduction pathways, which regulate expression of genes encoding the key components of the pathway. It is proposed that the levels of expression of these genes regulate the flux of S through the assimilatory pathway (Kredich, 1993
; Hawkesford and Smith, 1997
). These feedback loops prevent excess uptake and reduction of S which would result in an accumulation of potentially toxic sulphide if OAS is limiting. A surplus of reduced sulphur-containing compounds act to repress expression of the transporter and the APS reductase. Although there is some regulation of expression of many components of the assimilatory pathway, most notably the APS reductase, by far the greatest regulation seems to be at the level of the transporters, with mRNA pool sizes and transporter activity being regulated by S-availability (Smith et al., 1997
). Following re-supply of sulphate to S-starved hydroponically grown barley plants, repression occurs very rapidly. The mRNA pools for the transporter decreased within 1 h, and activity and protein abundance decreased within 24 h. The identity of the negative regulatory compounds which are involved in this repression mechanism awaits confirmation and may be cysteine or glutathione or even sulphide itself. It is this feedback loop primarily, which limits excess accumulation of sulphate, but which has a secondary effect in limiting reduction.
In a situation where S is limiting, a second feedback control loop may act to facilitate de-repression. In this case when serine is in excess and S is limiting, there will be no sulphide present for the biosynthesis of cysteine or for the allosteric inhibition of OAS synthesis, and therefore OAS accumulates. Experimental evidence (Smith et al., 1997
) suggests that OAS is a positive transcription regulator of transporter expression in plant, a situation analogous to that found for prokaryotes (Kredich, 1993
). Furthermore the presence of OAS partially overrode the negative feedback provided by the reduced S-compound. When repression occurs, this may be due to both the negative feedback activity of the reduced S-compound, reinforced by the absence of the activator, OAS. The regulation is an adaptive strategy to maximize resource capture, maximizing flux to cysteine under S-limiting condition, but with built-in controls to prevent the system running away with itself. Thus sulphate uptake is intrinsically linked to availability, demand for reduced S and also the supply of C/N skeletons. A consequence of this fine regulation is that sulphate is unlikely to be accumulated to any degree.
A multitude of transportersgene families and sites of expression
The first plant sulphate transporters, from Stylosanthes hamata (Smith et al., 1995b
) and from barley (Smith et al., 1997
), were cloned by phenotypic complementation of a yeast mutant (Smith et al., 1995a
). The nature of the selection process, and the subsequent functional analysis of the transporters when expressed in yeast, confirmed that these were transporters for sulphate. Both high (10 µM) and low (100 µM) affinity transporters were cloned from Stylosanthes hamata (SHST1/2 and SHST3, respectively). Subsequently, other transporters have been identified, either fortuitously or by screening libraries or EST databases, most notably in Arabidopsis. Two wheat transporters (TTST1 and TTST2) have been isolated by heterologous screening (IM Prosser and MJ Hawkesford, unpublished results) bringing the total number of plant transporters belonging to this family to around 20, including seven different members in Arabidopsis. All of these sequences were isolated or identified by exploiting sequence homology and are therefore related at the sequence level, however, not all have been confirmed to be sulphate transporters by functional analysis. The amino acid sequence similarity clearly defines this group of transporters, and the complete absence of homology to any other known transporter family makes this transporter group a completely unique type. Following sequence comparison and display of the degree of similarity as a phylogenetic tree, clear sub-groups become apparent (Fig. 2
). The sub-groups do not follow strict phylogenetic divisions and it is proposed that they represent functional sub-groups. For example, the seven Arabidopsis types (underlined) are relatively unrelated and are found dispersed around the tree. Possible functional sub-groupings for some sequences are indicated on the figure, although these grouping are very speculative, as current information on sites of expression is rather limited. A high affinity group, specifically expressed in the root, is defined by SHST1, SHST2, HVST1, and TTST1 (Smith et al., 1995b
, 1997
; IM Prosser and MJ Hawkesford, unpublished results). TTST2 is an anomaly in this group in that whilst it shows high homology to TTST1, it is not highly expressed in the roots (Prosser and Hawkesford, unpublished results). The closest Arabidopsis homologue in this sub-group is AST101. A second group is expressed in both root and shoot. Expression studies show that AST68 is expressed near to root and shoot vascular tissues (Takahashi et al., 1997
) and is highly regulated by S-availability in the root. AST56 is also expressed in the root and the shoot (Takahashi et al., 1996
). SHST3 is shoot expressed (Smith et al., 1995b
) and a low affinity type. NOD70 is a soybean root nodule expressed gene (Kouchi and Hata, 1993
; Sandal and Marcker, 1994
). Members of the third group, with putative leaf specific expression, and whose expression has been confirmed, are the Sporobolus transporter cDNA, which came from a shoot expressed library (Ng et al., 1996
) and ATD631 which is homologous to the EST clone, 76E7T7, reported to be leaf specific (Takahashi et al., 1996
). The remaining three sequences do not fall within any of these tentative groupings.
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Why are there so many transporters?
In between entering the symplast of the plant somewhere in the root and reaching the primary site for reduction, generally considered to be the chloroplast in the leaf tissues, multiple cell-to-cell transfers and transfers across intracellular membranes for the sulphate ion may be envisioned. Balanced against this scenario is the substantial energetic cost of multiple active membrane transport steps (Clarkson, 1993
) and at least some cell-to-cell transfer may involve plasmodesmata or transport via channels. Some possible sites for trans-membrane transport of sulphate are listed in Table 1
. It is possible that the same transporter (encoded by a single gene) is expressed in different locations and could catalyse several of these steps. It is also very likely that more than one transporter is involved, and that a multi-gene family exists in all higher plants, although this has only been convincingly demonstrated in Arabidopsis (seven types), and to a much lesser extent in cereals and Stylosanthes (two types found in each). Another unexplored possibility is that there are other sulphate transporters, with unrelated primary amino acid sequences, operating at some of these sites, which have not as yet been cloned or recognized. Such a scenario is quite likely as the bioenergetics of transfers, particularly across endo-membrane systems is quite different to that found at a root plasma membrane. It has been suggested that the phosphate exchange transporter in the plastid catalyses sulphate transport across the chloroplast membrane (Hampp and Ziegler, 1977
; Mourioux and Douce, 1979
). Alternatively, as ABC-type transporters exist in plants (reviewed in Rea et al., 1998
), there is the possibility that systems analogous to the principal prokaryotic sulphate transport systems are also functioning in plants.
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| Potential targets for genetic engineering |
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In order to achieve the objective of enhancing the efficiency for sulphate uptake and storage/remobilization, specific targets need to be identified, and transgenic plants made and tested. The clearly defined functions of the sulphate transporters makes these potential sites for manipulation.
Targets for engineered improvement of S-utilization efficiency may be split into two levels as summarized in Fig. 3
. The first level is aimed at improving resource capture. Maximized uptake will lead to increased S-reserves, and the second level is aimed at efficient utilization of the increased uptake. The first targets for enhancing uptake are the transporter systems. From a functional viewpoint the plant sulphate transporter system has evolved to be an extremely efficient uptake system, with a high affinity for sulphate in the low micromolar range (Smith et al., 1995b
, 1997
). This corresponds to typical soil solution sulphate concentrations and engineering for higher affinities may not be particularly useful even if technically feasible. Expression of the transporters is controlled by the nutritional status of the plant and the transporters are most highly expressed under S-limiting conditions. This control represents a mechanism evolved to maximize capture under nutrient-limiting conditions, but also is a mechanism to limit uptake when sulphate is abundant. Quite why this should be the case is not clear, but may be a mechanism to avoid wasteful expenditure of energy in transporting ions not immediately required for growth. Overriding this control might be achieved by expressing the transporter under the control of an appropriate constitutive promoter. A limitation to this approach may be achieving the appropriate targeted expression in specific cells of the root. As multiple steps in the uptake and assimilatory pathway seem to be co-ordinately controlled, removing the control only for the transporter would allow sulphate accumulation but leave intact the regulatory mechanisms preventing over-accumulation of sulphide.
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An alternative target is root structure and proliferation. It is well known that lateral roots proliferate with localized application of some nutrients, principally nitrate, phosphate and potassium (Drew, 1975
Modifying metabolism to utilize available-sulphate or even to stimulate further sulphate uptake by introducing increased demand for sulphate is another clear option. In the second level targets it is proposed that novel sinks (high S-containing proteins) are introduced to act as strong sinks. This is a clear strategy for improved nutritional quality of crops. The limitation of the processes of sulphate remobilization have been discussed, particularly the apparent non-mobile nature of vacuolar reserves. If this were the case, then along with enhanced uptake mechanisms, these processes would also need manipulation. The limitation here is that at present, almost nothing is known of the transporters catalysing sulphate fluxes into and out of the vacuole.
| Acknowledgments |
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IACR receives grant-aided support from the Biotechnology and Biological Sciences Research Council of the UK.
| Notes |
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1 Fax: +44 1582 763010. E-mail: malcolm.hawkesford@bbsrc.ac.uk
| Abbreviations |
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OAS, O-acetylserine; SATase, serine acetyl transferase; Rubisco, ribulose-1,5-bisphosphate carboxylase/oxygenase; SHST1 etc, Stylosanthes hamata sulphate transporter; HVST1, Hordeum vulgare sulphate transporter; TTST1 etc., Triticum tauschii sulphate transporter.
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P. Buchner, H. Takahashi, and M. J. Hawkesford Plant sulphate transporters: co-ordination of uptake, intracellular and long-distance transport J. Exp. Bot., August 1, 2004; 55(404): 1765 - 1773. [Abstract] [Full Text] [PDF] |
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M. Y. Hirai, M. Yano, D. B. Goodenowe, S. Kanaya, T. Kimura, M. Awazuhara, M. Arita, T. Fujiwara, and K. Saito From The Cover: Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana PNAS, July 6, 2004; 101(27): 10205 - 10210. [Abstract] [Full Text] [PDF] |
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H. Hesse, V. Nikiforova, B. Gakiere, and R. Hoefgen Molecular analysis and control of cysteine biosynthesis: integration of nitrogen and sulphur metabolism J. Exp. Bot., June 1, 2004; 55(401): 1283 - 1292. [Abstract] [Full Text] [PDF] |
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A. J. Meyer and M. D. Fricker Control of Demand-Driven Biosynthesis of Glutathione in Green Arabidopsis Suspension Culture Cells Plant Physiology, December 1, 2002; 130(4): 1927 - 1937. [Abstract] [Full Text] [PDF] |
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N. Ohkama, D. B. Goto, T. Fujiwara, and S. Naito Differential Tissue-Specific Response to Sulfate and Methionine of a Soybean Seed Storage Protein Promoter Region in Transgenic Arabidopsis Plant Cell Physiol., November 15, 2002; 43(11): 1266 - 1275. [Abstract] [Full Text] [PDF] |
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