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Journal of Experimental Botany, Vol. 51, No. 342, pp. 9-17, January 2000
© 2000 Oxford University Press

Wild barley: a source of genes for crop improvement in the 21st century?

R.P. Ellis1, B.P. Forster, D. Robinson, L.L. Handley, D.C. Gordon, J.R. Russell and W. Powell

Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK

Received 25 February 1999; Accepted 13 October 1999


    Abstract
 Top
 Abstract
 Introduction
 Materials and methods
 Results
 Discussion
 References
 
The development of new barleys tolerant of abiotic and biotic stresses is an essential part of the continued improvement of the crop. The domestication of barley, as in many crops, resulted in a marked truncation of the genetical variation present in wild populations. This process is significant to agronomists and scientists because a lack of allelic variation will prevent the development of adapted cultivars and hinder the investigation of the genetic mechanisms underlying performance. Wild barley would be a useful source of new genetic variation for abiotic stress tolerance if surveys identify appropriate genetic variation and the development of marker-assisted selection allows efficient manipulation in cultivar development. There are many wild barley collections from all areas of its natural distribution, but the largest are derived from the Mediterranean region. The results of a range of assays designed to explore abiotic stress tolerance in barley are reported in this paper. The assays included; sodium chloride uptake in wild barley and a mapping population, effects for {delta}13C and plant dry weight in wheat aneuploids, effects of photoperiod and vernalization in wild barley, and measurements of root length in wild barley given drought and nitrogen starvation treatments in hydroponic culture. There are examples of the use of wild barley in breeding programmes, for example, as a source of new disease resistance genes, but the further exploration of the differences between wild barley and cultivars is hampered by the lack of good genetic maps. In parallel to the need for genetic studies there is also a need for the development of good physiological models of crop responses to the environment. Given these tools, wild barley offers the prospect of a ‘goldmine’ of untapped genetic reserves.

Key words: Abiotic stress, genetic diversity, germplasm collections, SSR, barley


    Introduction
 Top
 Abstract
 Introduction
 Materials and methods
 Results
 Discussion
 References
 
The improvement of abiotic stress tolerance in the barley crop (Robinson et al., 2000Go) depends on understanding the range of genetic variation possessed by cultivated barley (Hordeum vulgare subsp. vulgare L.) and wild barley (H. vulgare subsp. spontaneum C. Koch.). In turn, the rate of progress depends on the occurrence of genetic variation desirable for crop development and the availability of precise methods of gene transfer and selection.

The development of dense chromosome maps, based on molecular markers, has permitted the detection of quantitative trait loci (QTL) (Hayes et al., 1997Go; Thomas et al., 1998Go) for a range of characters in cultivated barley. This gives potential for the study of genetic mechanisms underlying field performance and reveals the need for new genetic variation. Even in the relatively benign environments experienced in Scotland, where spring barley crops have higher yield potential than in southern England (Ellis and Kirby, 1980Go), periodic drought can depress yield (Russell and Ellis, 1988Go). While such cycles of yield depression in this type of situation may not cause famine it is still desirable to improve the abiotic stress tolerance of cultivars to enhance crop reliability. World-wide, environments are more extreme with drought and salinity causing widespread problems. In addition, the anticipated problems associated with human population increase and the lack of water available for agriculture mean that water-efficient crops are required. In particular situations the ability to use saline water for crop irrigation may be an advantage, requiring greater salt tolerance in crops.

Surveys of the genetic variation in wild barley and studies of the process of domestication show that cultivars represent only a part of the range of variation seen in wild populations. In particular, the loss of rare alleles (Saghai Maroof et al., 1990Go) may be particularly significant, as it has been reported that genetic diversity is greatest in populations from the most highly stressed environments (Nevo et al., 1997Go). A re-examination with simple sequence repeats (SSR), a more informative genetic assay than dominant markers (Powell et al., 1996Go), has shown that the actual situation is more serious than previously thought, as only some 40% of the alleles found in wild barley are present in cultivars (JR Russell, unpublished results).

Wild barley and Middle Eastern landraces have already proven to be a very fruitful source of genes for modern crop improvement. A notable example is the development of the mlo resistance to powdery mildew (reviewed by Thomas et al., 1998Go), which took place over a period of 40 years. There are fewer examples of useful genes for grain quality than disease resistance, probably because quantitative variation in endosperm composition confers few evolutionary advantages. However, it has been shown that desert populations consisted of slender plant types with thinner husk and lower grain milling energy (Ellis, et al., 1993Go) and the variation for ß-amylase has been analysed (Erkkila et al., 1998Go).

Cultivated barley and its wild relative have been considered by a number of authors to be both the same and different species (Bothmer et al., 1995Go). There is a range of flowering habit in cultivated barley from out-pollination to fully closed flowering (cleistogamy), particularly emphasized in the development of cultivars, for example, Proctor, resistant to loose smut (Ustilago nuda (Jens) Rostr). This taxonomic discussion is important in that it focuses on the utilization of the germplasm. While wild and cultivated barley are inter-fertile, introgression does not occur in the majority of cultivated crops. Hence, crossing programmes do not enrich wild populations and are only intended to transfer particular attributes into cultivars. The wide differences between wild and cultivated barley for a number of traits (Paterson et al., 1995Go) have meant that backcrossing has been the technique most widely used in cultivar improvement with wild barley germplasm.

Desert populations may be considered a source of valuable genes, for example, low milling energy (Ellis et al., 1993Go), but often physiological mechanisms interact with environments in a complex manner. It was expected that plants in desert populations would show ‘high water use efficiency’, but in fact they exploit sporadic rainfall and actually ‘squander’ water (Handley et al., 1994Go). This highlights the need to develop appropriate physiological models in parallel to exploring the genetic architecture of barley. The development of physiological models is, in turn, dependent on genetic variation. It was suggested that the model of genetical and environmental control of flowering in Arabidopsis (Weigel, 1995Go) can be applied to barley (Hay and Ellis, 1998Go). The model implies the interaction of some 30 known genes and so it is evident that wide allelic variation over such a large number of loci is important for their discovery.

Time of flowering is an important event in the life cycle because it defines the time at which grain growth begins. In temperate climates time of flowering effectively defines yield potential. Time of flowering is affected by genes controlling the response to vernalization, to differences in daylength and earliness per se (Hackett et al., 1992Go; Laurie et al., 1995Go; Bezant et al., 1996Go; Laurie, 1997Go). The genetic diversity of chromosome 4H has been explored in the light of previous reports (reviewed by Forster et al., 1997Go) of genes associated with 13C/12C discrimination (Handley et al., 1994Go; Ellis et al., 1997Go), drought tolerance (Chalmers et al., 1992Go) and sodium discrimination in wheat (Gorham et al., 1987Go). In this paper, consideration is given to the need for new genetic variation, its possible sources, methods of identification, and developments to facilitate gene transfer. In particular, the role of hydroponic experiments that provide flexible, rapid assays for the selection of genotypes with contrasting traits for subsequent testing in field trials are examined (Forster et al., 2000Go).


    Materials and methods
 Top
 Abstract
 Introduction
 Materials and methods
 Results
 Discussion
 References
 
Plant material: hydroponic experiments
Experiment 1: reaction to sodium chloride, effects on sodium and chloride uptake, plant dry weight and {delta}13C.
Seed of 57 doubled haploids from the cross HS92xLina (HS92 is an accession of H. spontaneum from Canada Park, Israel), 30 wild barley genotypes, i.e. one genotype selected randomly per population (Pakniyat et al., 1997Go), Chinese Spring (CS) wheat, Betzes barley, and wheat disomic addition lines for barley chromosome 4, i.e. 4H, 4Hch, 4HS, and 4HL were grown in the same experiment. Later, assay by AFLP indicated a number of duplicate genotypes in the HS92xLina doubled haploids that may have arisen in tissue culture so, after elimination of the duplicates, data were available for 53 doubled haploids. The disomic 4H is derived from cv. Betzes and 4Hch from Hordeum chilense and S and L denote the presence of the short and long arms, respectively of Betzes 4H. Seeds were germinated in Petri dishes and then transplanted into open-ended centrifuge tubes packed with dampened perlite.

The seedlings were established at laboratory temperatures for 7 d (coleoptile fully emerged), and then the tubes were transferred to a controlled environment maintained at 4 °C and lit by high-pressure sodium lamps at 300 µmol m-2 s-1 for an 18 h day. After vernalization for 6 weeks the tubes were put, on 11 September 1995 (day 1), into solution culture in a glasshouse maintained between 16–24 °C with natural daylight supplemented by high-pressure sodium lamps at 300 µmol m-2 s-1 for 16 h d-1. External air was supplied continuously by ventilation and an extractor fan to maintain source CO2 and its {delta}13C constant.

The experimental design consisted of five replicates of a randomized block, arranged so that each replicate, consisting of a control and a salt treatment, was contained within six tubs. In each tub, 36 experimental plants were surrounded by 26 guard plants and the hydroponic solution was continuously and vigorously aerated (as in Robinson et al., 2000Go).

After a further 10 d growth in the glasshouse (day 11, when the seedlings had 2–3 fully emerged main stem leaves), NaCl was added to the salt treatments in equal increments every 2 d between 21 September and 3 October 1995 (day 23). The final concentration was 175 mol m-3 and this was maintained until harvest on 11 October 1995 (day 31), just after the control treatment started to show lodging (seedlings showed 5–8 fully emerged main-stem leaves). CaCl2 was added to maintain a Na+ to Ca2+ ratio of 20 : 1.

Whole shoots of the HS92xLina doubled haploids were oven-dried, milled in a ball mill and analysed for {delta}13C (Handley et al., 1993Go). The wild barley genotypes and Chinese Spring (CS) wheat, Betzes barley, and wheat disomic addition lines were also milled and 10 mg of each sample was placed into an Eppendorf tube. 1 ml of deionized water was added, the mixture was mixed with a vortex mixer and left for at least 1 h to dissolve salts. Shoot Na+ and Cl- content was measured using Ion Sensing Electrodes (Lazar, ISM-146) and readings converted to mg of sodium and chloride g-1 DM.

Experiment 2: drought and nitrogen starvation effects on root length.
Seeds of 30 H. spontaneum genotypes from sites in the Middle East (Pakniyat et al., 1997Go) were germinated on 13 September 1996. Three days later, when roots were 5–6 mm long, seedlings were transplanted into open-ended centrifuge tubes filled with 0.8% agar containing 200 mg l-1 benzimidazole to suppress fungal pathogens and cultured in solution (Robinson et al., 2000Go). The length of roots, from the grain to the tip of the longest root, was measured for each plant on 20 September 1996 (day 16), when plants had 4–6 fully emerged leaves.

Time of flowering studies
Seeds of 39 wild barley lines (Pakniyat et al., 1997Go), i.e. one genotype selected randomly from each population, were germinated in Petri dishes and sown into pots of peat-based compost. Seedlings were vernalized at 4 °C for 6 weeks in 8 h day, lit by high-pressure sodium lamps at 300 µmol m-2 s-1. After vernalization, replicated layouts of the plants were grown in controlled environments with 10 h and 16 h day lengths. In addition, vernalized and unvernalized plants were grown in a glasshouse maintained between 16–24 °C with natural daylight supplemented by high-pressure sodium lamps at 300 µmol m-2 s-1 for 16 h d-1.

Time of flowering was observed as the time at which 1 cm of awn had emerged from the flag leaf sheath of the main stem. Plant height (cm) was also measured on the main stem, from the coleoptile node to the neck, ear length (mm) was taken from the neck to the base of the lemma awn of the uppermost grain and awn length (mm) measured from the base of the lemma awn of the uppermost grain tip to the tip of the longest awn.

Where appropriate, data from all the experiments were analysed first with the REsidual Maximum Likelihood (REML) procedure (Horgan and Hunter, 1993Go) to establish the absence of block effects and then by analysis of variance to investigate the significance of treatment effects.

SSR assays
DNA was isolated from the wild barley genotypes and was used to score four SSRs whose map locations were already known (Waugh et al., 1997Go). Primer sequences and amplification conditions for two of these markers, HVM3 and HVM 67, have been published previously (Lui et al., 1996Go). Two further markers HvOLE and Bmac0181were developed at the Scottish Crop Research Institute and primer sequences and amplification conditions are available over the Internet after registration by email with estew{at}scri.sari.ac.uk. The SSRs were scored by estimating the product size in relation to a standard marker.


    Results
 Top
 Abstract
 Introduction
 Materials and methods
 Results
 Discussion
 References
 
Na/Cl uptake in H. vulgare s.l.
Wild barley accessions showed a significant genotype effect for sodium and chloride concentration (Table 1Go). Sodium and chloride composition showed no significant relationship to each other, but genotypes sampled from Canada Park, Israel; Shahabad-e Gharb in Iran and the Turkish sites Gaziantep and Urfa showed lower sodium concentration than the average (Fig. 1Go). These genotypes contrast with plants from Mehran and Symarch, sites in Iran, in which sodium was most concentrated.


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Table 1. Analysis of variance for sodium and chloride ion content (mg g-1) of plants grown in a complete culture solution to which NaCl was added

 


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Fig. 1. Variation for sodium and chloride concentration in shoot dry matter for wild barleys grown in a complete nutrient solution to which salt was added. Each point is the mean for a genotype. For clarity only the outlying genotypes are identified (sites from Pakniyat et al., 1997Go).

 
Scores of sodium and chloride concentration in doubled haploids from the cross LinaxCanada Park showed significant genetic effects but only for chloride (Table 1). An attempt to locate QTLs for chloride and sodium concentration failed to find significant marker/trait associations for markers on chromosome 4H.

Dry weight and {delta}13C
Chinese Spring (CS), Betzes and the barley chromosome 4H disomic additionlines showed significant treatment and genotype effects on plant weight and shoot {delta}13C (Table 2Go). The largest plants in the Control were the 4HL and the Hordeum chilense 4Hch addition lines while the 4H and 4HS additions were similar to Betzes andChinese Spring, respectively. In the Salt treatment the 4HL and 4Hch addition lineswere also the heaviest and the remaining genotypes did not differ. These data imply the existenceof a factor concerned with seedling salt tolerance, expressed as dry weight, on chromosome 4HLbut do not indicate whether or not Na+/K+ discrimination is involved.


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Table 2. Analysis of variance fortraits measured in Chinese Spring group 4H barley addition lines given a salt treatment

 
In the case of 13C/12C discrimination the data show a significantly different pattern. In the Salt treatment the 4H and 4HL addition lines showed a morenegative {delta}13C than Chinese Spring or Betzes, but the 4Hch addition was only slightly more tolerant than Chinese Spring. In the Control Betzes, Chinese Spring and the 4HS and 4Hch disomic addition lines showed similar {delta}13C values while {delta}13C for the 4HL addition and 4H additions was more negative than Chinese Spring. The reaction of the 4H disomic addition line indicates that the stomata of this genotypewere more often open and that water conduction through the plant was greater than in Chinese Spring or Betzes. The reason for this response is unknown; it may indicate ‘tolerance’ of waterculture and further explanation requires a more precise definition of the genotype of the addition line.

Flowering time, plant morphology and root length
Flowering under controlled conditions was variable (Table 3Go) with highly significant effects of 10 h and 16 h photoperiods and vernalization treatments. The shortest time to flowering was seen in the vernalized plants while, in contrast, the longest time to flowering was found in the plants grown in 10 h days.


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Table 3. (a) The effects of 10 h and 16 h photoperiods on the flowering time and the size of plant parts in populations (sites as Pakniyat et al., 1997Go) ofHordeum vulgare subsp. spontaneum

 
Photoperiod differences resulted in significant effects on plant morphology (Table 3a) as ear length and plant height were greater in long days, but awn length was reduced. Vernalization treatments also had morphological consequences (Table 3b), possibly more significant in situ than photoperiod effects, with early flowering after vernalization associated with longer ears and awns but shorter plants.

The analysis of variance for root length in wild barley genotypes,given a series of treatments, in solution culture, showed highly significant treatment and genotype effects (Table 4Go).In addition, the analysis detected significant genotype with treatment interaction. Root length, relative to the control, was reduced (to about 50%) by the Drought treatment but increased (to125%) by the Nitrogen starvation treatment. This does not mean that the greatest total root length or biomass (Robinson et al., 2000Go) occurred in the Nitrogen starvation treatment since,while being longer overall, roots of the Nitrogen starvation treatment had fewer laterals.


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Table 4. Root length inplants from wild barley populations (sites as in Pakniyat et al., 1997Go) given drought and nitrogen starvation (see Robinson et al., 2000Go)

Analysis of variance for root length.

 
Root length may have biological importance in allowing the exploitation of soil water and mineral nutrients. No assays of the uptake of mineral nutrients are reported, as this study is a survey of genetic differences that depend on unknown mechanisms. Root length was shortest inthe Canada Park sample (mean 14.9 cm) and longest in the sample from Urfa (mean44.4 cm). There was no obvious relationship between mean root length and theenvironmental data reported (Pakniyat et al., 1997Go), for example,both Canada Park and Urfa tend to the driest extremes of the sites reported. In contrast, the sample from the wettest site, Mt. Hermon, ranked eight with a mean root length of36.7 cm, i.e. close to the driest site, Mehran, that, with a mean root length of33.1 cm, ranked tenth.

It may be more appropriate to assess response relative to the Control treatment rather than the absolute responses. The smallest relative response to the Drought treatment was seen in the Bitlis (20) and Gawdar (6) samples and the largest in Canada Park (39). For the Nitrogen starvation treatment the smallest response was in the Nahal Oren (36)sample and the largest in both the Gaziantep samples (11, 12). While it may be difficult to relate the differences reported to simple environmental measures, it is hypothesized that the underlying genetic differences are related to environmental responses, and this hypothesis is testable insubsequent studies.

Significant negative correlations were found between flowering time and root length (Table 5Go), particularly for plants given avernalization treatment and grown in the glasshouse (VGH). The time from germination to flowering delimits the period for growth and differentiation at the stem apex and, by analogy, the corelations reported may indicate a similar regulatory effect for root growth. In the context of theuse of germplasm for cultivar improvement the correlations that were found imply significant problems in the manipulation of phenotypic characters. Marker assisted selection procedures offer the optimum solution.


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Table 5. Correlationsbetween time of flowering and root growth in 30 common populations of wild barley (sites from Pakniyat et al., 1997Go)

VGH and UGH are glasshouse-grownplants given vernalization treatment or unvernalized, respectively (significance levels indicatedas Table 1).

 

SSR
Variation in SSR on chromosome 4H is summarized in Table 6Go.Two of the loci assayed on chromosome 4H, i.e. HVM3, in the Rubisco activase gene, and Bmac0181 had more alleles than HvOLE and HVM67. The driest and wettest environments tested (Pakniyat et al., 1997Go) were Mehran and Mt. Hermon, which show contrasting alleles at all the loci assayed. Similarly, environmental extremes of temperature and moisture were associated with wide genetic diversity. The alleles in the wild barley lines can be contrasted with those in the cultivar Blenheim in which the HVM3 allele was of the same size as that found in the wild barley growing at the driest site and the HVM67 allele was not represented in the wild barley samples. The SSR HVM3 in the gene coding for Rubiscoactivase has a wide range of alleles and provides an extreme example of the effects of domestication as in 50 wild barley accessions there were 17 alleles while in 101 cultivars there were nine (JR Russell, unpublished data).


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Table 6. Variation observed for allele size (number of base pairs) at four SSR loci on chromosome 4H in wild barley populations

Salt-tolerant plants contrast with salt-susceptible in the amount of Na+ assayed after seedling harvest. Dry/wet, hot/cold site contrasts are based on meteorological data (Pakniyat et al., 1997Go) and cv. Blenheim is included as an example of a modern cultivar.

 


    Discussion
 Top
 Abstract
 Introduction
 Materials and methods
 Results
 Discussion
 References
 
The dilemma faced by gene bank curators has always been that evaluation of the accessions is necessary before they can be routinely used in breeding programmes. Alternately, the use of exotic material in a breeding programme often necessitates a ‘pre-breeding programme’ to move useful genes into an adapted background. While there are outstanding examples of success in the transfer of disease resistance from exotic sources into modern cultivars (Thomas et al., 1998Go), there are also examples of complex disease resistances leading to problems with malting quality.

Studies of canopy development and dry weight accumulation show that modern cultivars are vulnerable to reduced rainfall in the early summer even in the UK (Russell and Ellis, 1988Go). Careful analysis of the adaptation of barley to harsh Mediterranean environments has illuminated the role of plantmorphology, apical development and, particularly, drought avoidance by appropriate time of flowering (van Oosterom and Acevedo, 1992aGo, bGo, cGo). The time of flowering in wild populations depends on the profundity of post-harvest dormancy (Guttermann and Gozlan, 1999Go) and seedling responses to temperature and light (Kirby and Ellis, 1980Go). As profound dormancy is not a useful trait in malting barley the present study concentrated on day length and vernalization responses.

Some of the contrasts in environmental stresses that exist in wild barley populations and cultivars can be usefully enumerated in Table 7Go.


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Table 7. Some environmental differences between wild barley populations and barley cultivars

 
The environmental contrasts between the Mediterranean Region and north-west Europe are an essential reason for much of the loss of genetic variability in the production of cultivars. They may not be the most important reasons for the loss of variability asselection for heading date, ear and seed traits are of greater importance (Paterson et al., 1995Go).

The genetic heterogeneity of wild populations has long been recognized as an important mechanism of adaptation to the environment (Nevo et al., 1997Go). Commercial pressures in crop production ensure the greatest possible morphological and developmental uniformity in crops but with the consequence of vulnerability to biotic and abiotic stresses. The application of contemporary genetical techniquesto barley breeding will allow the better definition of traits determining stress tolerance and realize the potential for the construction of appropriate cultivar mixtures.

There is as yet no demonstration of successful transfer of greater drought tolerance into European cultivars. This is not surprising in view of the complexity of the possible mechanisms that underlie droughttolerance (van Oosterom and Acevedo, 1992aGo, bGo, cGo). In breeding programmes it is not possible to manipulate such complex characteristics with the sole use of conventional phenotypic assays.The assessment of characters such as rate of apex differentiation, harvest index, stem soluble carbohydrate content or yield in drought is often too complex to be justified. Appropriate marker/trait associations are needed to define drought responses at the level of the plant cell andorgan. These markers can then be used in the selection of the appropriate alleles in breeding programmes. It is suggested that the development of methods to test seedlings in controlled environments is a useful step (see Table 5; Robinson et al., 2000Go) in examining such marker/trait associations. For example, unpublished data from this laboratory indicate that the effects of dwarfing genes observed in the field are mimicked in solution culture. This hypothesis has been examined by identifying extreme genotypes in solution culture, backcrossing them with local cultivars and the SSR genotyped recombinants tested at Mediterranean sites in northern Africa (Forster et al., 2000Go).

Germplasm collections can be made systematically by exploiting potential genoclines associated with known ecoclines. The success of this non-random sampling of genetic diversity depends on a number of factors. For example,the innate genetic diversity of the species, the flowering habit, the nature of migration and the extent of selection by environmental components. This work is a further illustration that theFertile Crescent contains considerable variation between populations. These genetic differences are reflected in physiological characteristics and now the challenge is to devise marker assisted selection techniques to make this variation available for crop improvement. This survey provides a starting point for detailed studies of genetic variation in barley for economically importanttraits. Crosses between cultivars and Hordeum vulgare subsp. spontaneumgenotypes that contrast for physiological traits and the creation of mapping populations will permit more detailed genetic analysis. The identification of QTL and in special cases, genecloning, are steps in the process of building a programme for the genetic manipulation of abiotic stress tolerance (Forster et al., 2000Go) without using transformation.


    Acknowledgments
 
The Scottish Crop Research Institute receives grant in aid from The Scottish Executive Rural Affairs Department. We thank E Nevo, University of Haifa, for the gift of the seed and S Holdus for technical assistance. We thank the anonymous referees for very helpful and constructive comments.


    Notes
 
1 To whom correspondence should be sent. Fax: +44 1382 568507. E-mail: ellis@scri.sari.ac.uk

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 Introduction
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 Discussion
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