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Journal of Experimental Botany, Vol. 52, No. 356, pp. 565-576, April 2001
© 2001 Oxford University Press

Using immunohistochemistry to study plant metabolism: the examples of its use in the localization of amino acids in plant tissues, and of phosphoenolpyruvate carboxykinase and its possible role in pH regulation

Robert P. Walker1,3,4, Zhu-Hui Chen1,3, Karen E. Johnson1, Franco Famiani2, Laszlo Tecsi1 and Richard C. Leegood1

1 Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
2 Istituto di Coltivazioni Arboree, Universita degli Studi di Perugia, via BorgoXX Guigno, 74-06121 Perugia, Italy

Received 31 March 2000; Accepted 5 December 2000


    Abstract
 Top
 Abstract
 Introduction
 Localizing amino acids in...
 How immunohistochemistry is...
 Conclusions
 References
 
To understand many aspects of the metabolism of complex plant structures such as leaves, fruit and roots it is important to understand how metabolic processes are comparmentalized between tissues. The aim of this article is to show how immunohistochemistry, in conjunction with biochemical and physiological studies, is useful in understanding both the function of an enzyme in a tissue and metabolic processes occurring in plant tissues. This is illustrated by two examples. Firstly, the use of immunohistochemisty in the localization of amino acids in plant tissues is described. Secondly, the use of immunohistochemistry in understanding the function of an enzyme in a tissue and the metabolic processes occurring within the tissue is described. To illustrate this the example of phosophoenolpyruvate carboxykinase (PEPCK), an enzyme which is present in many plant tissues in which its function is unknown, is used. Evidence is provided that PEPCK may play a role in pH regulation in tissues active in the metabolism of nitrogen.

Key words: Phosphoenolpyruvate carboxykinase, amino acid localization, immunohistochemistry, nitrogen metabolism, pH regulation.


    Introduction
 Top
 Abstract
 Introduction
 Localizing amino acids in...
 How immunohistochemistry is...
 Conclusions
 References
 
Why is it important to understand how metabolism is comparmentalized between plant tissues?
The aim of this article is to show how immunohistochemistry, in conjunction with biochemical and physiological studies, is useful in understanding both the function of an enzyme in a tissue and metabolic processes occurring in plant tissues. Complex plant structures such as leaves, fruit and roots are composed of a number of different tissues which in turn contain several types of cell. The metabolic processes occurring within these different tissues and cells are likely to vary greatly and an understanding of this is important to both understanding the metabolism of the plant structure and the role of individual enzymes within it. A good example of this is the compartmentation of photosynthetic processes between the mesophyll and bundle sheath in leaves of C4 plants (Hatch et al., 1975Go; Edwards et al., 2001Go). However, in many plant structures our understanding of how metabolic processes are comparmentalized between different tissues is poor. Perhaps a reflection of this is the fact that the function of many enzymes in plant tissues is poorly understood. For example, phosphoenolpyruvate carboxykinase (PEPCK; EC 4.1.1.49; Walker et al., 1999Go), invertase (EC 3.2.1.26; Kingston-Smith et al., 1999Go), isocitrate lyase (EC 4.1.3.1; Nieri et al., 1997Go), pyruvate, orthophosphate dikinase (EC 2.7.9.1; Hudspeth et al., 1986Go), and NADP-malic enzyme (EC 1.1.1.40; NADP-ME; Famiani et al., 2000Go) are present in many tissues in which their function is uncertain.

How do we study cell specific metabolism?
For abundant cell types, such as the photosynthetic cells of leaves, approaches that have used the entire leaf have been very successful. On the other hand it is much more difficult to study the metabolism of low abundance cell types because metabolic processes occurring within them are masked by those of more abundant cell types. Many approaches have been used to study cell specific metabolism. One approach has been to isolate specific cell types, the isolation of mesophyll and bundle sheath cells from leaves of C4 plants was valuable in studying the C4 cycle (Hatch et al., 1975Go) and the isolation of aleurone tissue from germinating cereal seeds has been important in studying the interactions between plant hormones and metabolism (Fincher, 1989Go). Unfortunately, it is not possible to isolate most cell types at high yield and purity from plant tissues. A way round this problem has been to sample the contents of individual cells using, for example, single cell sampling (Oulaw and Zhang, 2001) the aphid stylet technique (Winter et al., 1992Go), microelectrodes (Walker et al., 1998Go; Miller et al., 2001Go) or pressure probes (Tomos and Leigh, 1999Go; Tomos and Sharrock, 2001Go). A number of approaches that enable the constituents of different cells to be visualized under the microscope, such as the visualization of radiolabelled metabolites by microautoradiography (Fritz et al., 1983Go), the expression of reporter genes in transgenic plants (Feuillet et al., 1995Go), the visualization of mRNA by in situ hybridization (Marrison and Leech, 1994Go; Facchini and De Luca, 1995), and the visualization of antigens such as proteins using specific antibodies by immunohistochemistry (Famiani et al., 2000Go) or tissue printing (Kingston-Smith and Pollock, 1996Go) have been widely used to study cell specific metabolism.

Using immunohistochemistry to study compartmentation of metabolism between cells and tissues
Immunohistochemistry utilizes antibodies to visualize antigens in sections of tissue under the microscope. Although immunohistochemistry has been used since 1950 to localize antigens in animal tissues it was not until 1970 that this technique was first used in plants (Perrot-Rechenmann and Gadal, 1986Go). Immunohistochemistry may be used in conjunction with light or electron microscopy. Light microscopy often possesses sufficient resolution to determine the distribution of an antigen between tissues and cell types (Walker et al., 1999Go; Famiani et al., 2000Go). Electron microscopy offers higher resolution and is particularly useful in determining the distribution of an antigen within a cell (Voznesenskaya et al., 1999Go). To prepare tissue for immunohistochemistry it is fixed, embedded and then sectioned. Sections are then incubated with an antibody specific for the antigen (primary antibody) and antibody binding visualized (for a review, see Perrot-Rechenmann and Gadal, 1986Go). For light microscopy, several media such as paraffin (Ishiyama et al., 1998Go), polyethylene glycol (Marrison and Leech, 1992Go) and resin (Voznesenskaya et al., 1999Go), have been used to embed plant tissues. The ideal embedding medium should preserve both the structure of the tissue and antigenicity of the antigen whilst being easy to use. Under the light microcope binding of primary antibody may be visualized in a number of ways. The primary antibody itself may be prelabelled with, for example, a fluorochrome. More commonly, binding of the primary antibody is detected by incubation with either a protein A or a second antibody conjugate which bind to the primary antibody. This latter approach has the advantage that it introduces an amplification step and also avoids an initial conjugation of the fluorochrome to the primary antibody, which may lower its affinity (Perrot-Rechenmann and Gadal, 1986Go). Protein A or the second antibody may be conjugated to a fluorochrome (Marrison and Leech, 1992Go), gold particles (Voznesenskayaet al., 1999Go) or an enzyme such as phosphatase (Walker et al., 1999Go) which allow its subsequent visualization. Regardless of the procedure followed it is essential to ensure that signals observed are due to the presence of the antigen. The tissue itself may give rise to a signal by, for example, autofluorescence or the presence of endogenous peroxidase or phosphatase activity that have not been inactivated by the fixation and embedding procedures (Perrot-Rechenmann and Gadal, 1986Go). The specificity of the primary antiserum is crucial and it may require affinity purification (Fig. 1AGo). A useful control is to determine whether the pattern of labelling is similar with crude and affinity purified antiserum (Hayakawa et al., 1999Go). An indication of specificity of the antiserum may be obtained by performing an immunoblot of an SDS-PAGE gel using an extract of the tissue which is to be studied in immunohistochemistry (Voznesenskaya et al., 1999Go). The preimmune serum may give rise to a signal in immunohistochemistry which should be checked (Holthaus and Schmitz, 1991Go). The assessment of the specificity of signals seen in immunohistochemistry is discussed in more detail below.



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Fig. 1. (A) The specificity of an antiserum prepared against glutamate assessed by dot blotting. Different amino acid-rabbit serum albumin conjugates (1 µl) were applied to nitrocellulose membrane which was dried, blocked in 3% (w/v) dried milk/TBS and then incubated with either a crude or an affinity purified antiserum to glutamate at a dilution of 1:1000. Blots were processed as described previously (Walker and Leegood, 1996Go). (B) The specificity of the affinity purified antiserum to glutamate in immunohistochemistry. Leaves from 14-d-old cucumber seedlings (Cucumis sativus L. cv. Marketmore, grown in perlite under a 12 h photoperiod and an illumination of 200 µmol quanta m-2 s-1 at 25 °C) were fixed in the presence of either no added amino acid, 5 mM glutamate or 5 mM alanine. Sections were probed using the affinity purified antiserum to glutamate at a dilution of 1:1000. The blue/black coloration indicates the presence of glutamate. (C) Localization of PEPCK protein and mRNA and PEPC protein in maize leaves (Zea mays L. cv. H511). Mature leaves of maize were taken from plants grown in the greenhouse during the summer. PEPCK and PEPC protein were localized in transverse sections using specific antisera at a dilution of 1:1000. PEPCK mRNA was localized using a digoxigenin (DIG)-labelled RNA probe corresponding to the full length cDNA from tomato (unpublished results). RNA was labelled with DIG using a kit from Boehringer Mannheim according to the manufacturers recommendations. The blue/black coloration indicates the presence of either antigen or PEPCK mRNA. The section showing structure was stained with Safranin/Astra blue. B, bundle sheath; M, mesophyll. The immunohistochemical methods used were described previously (Walker et al., 1999Go).

 
Immunohistochemistry has been widely used to localize antigens in plant tissues. The localization of enzymes by immunohistochemistry has provided valuable information about how metabolism is comparmentalized between different tissues in many plant structures such as the vasculature (Holthaus and Schmitz, 1991Go; Facchini and de Luca, 1995Go) developing seeds (Muhitch et al., 1995Go; Ruan et al., 1997Go), fruit (Famiani et al., 2000Go), leaves and stems (Voznesenskaya et al., 1999Go), and roots (Ishiyama et al., 1998Go). To illustrate how immunohistochemistry may be of use in studying plant metabolism two examples of recent work, its use in localizing amino acids in plant tissues and its use both in understanding the function of an enzyme in a tissue and the metabolic processes occurring within that tissue are described.


    Localizing amino acids in plant tissues using immunohistochemistry
 Top
 Abstract
 Introduction
 Localizing amino acids in...
 How immunohistochemistry is...
 Conclusions
 References
 
Immunohistochemistry using antibodies specific for different amino acids has been widely used to localize amino acids in animal tissues (Storm-Mathison et al., 1983Go; Aoki et al., 1988Go). This procedure has been valuable in studying the distribution of neurones that utilize different amino acids as neurotransmitters in the central nervous system (Conti and Minelli, 1994Go) and in studying the process of amino acid reabsorption in the kidney (Ma et al., 1994Go). In contrast, this technique has been little used in plants (Walker et al., 1999Go). To obtain antibodies that recognize specifically a given amino acid, the amino acid is conjugated to a carrier protein which is then used as an immunogen. The specificity of the resulting antiserum may be assessed by dot blotting on nitrocellulose membrane (Fig. 1AGo). This procedure involves applying different amino acid protein conjugates to nitrocellulose membrane. The membrane is then probed with an antiserum raised against one of the amino acid protein conjugates and antibody binding visualized in the same way as immunoblots of SDS-PAGE gels (Walker and Leegood, 1996Go). Antisera obtained are generally not specific and need affinity purification (Aoki et al., 1988Go; Ma et al., 1994Go; Fig. 1AGo). This lack of specificity is probably because the number of epitopes possessed by an amino acid is small and different amino acids possess some common epitopes. An antiserum against glutamate was prepared using the method of Aoki et al. (Aoki et al., 1988Go) and its specificity assessed by dot blotting (Ma et al., 1994Go). The crude antiserum was not specific for glutamate (Fig. 1AGo; this lack of specificity was also shown by antisera raised against aspartate, glutamine and asparagine conjugates, data not shown). The antibody against glutamate was purified by incubating 5 µl of crude antiserum with 10 µl each of aspartate, glutamine and asparagine rabbit serum albumin conjugates (prepared as described by Aoki et al., 1988Go) in 300 µl of 100 mM potassium phosphate buffer pH 7.4 at 25 °C for 2 h. After affinity purification the antibody only recognized glutamate on a dot blot (Fig. 1AGo). To assess the specificity of the antibody in immunohistochemistry, cucumber leaves were fixed using 3% glutaraldehyde in the absence of any amino acid or in the presence of either 5 mM glutamate or 5 mM alanine. Tissue fixed in the presence of glutamate was much more heavily stained (Fig. 1BGo). This technique was used to localize glutamate in a range of tissues such as developing grape seeds (Walker et al., 1999Go). This technique is potentially useful in studying many metabolic processes involving amino acids in plants and a number of antisera to different amino acids are available from commercial sources (see for example, www.immunologics.com). It remains to be determined whether this technique possesses sufficient sensitivity and specificity to be used to localize amino acids which are at low abundance in plant tissues.


    How immunohistochemistry is useful in understanding the functioning of plant tissues and the function of enzymes within them: the example of PEPCK
 Top
 Abstract
 Introduction
 Localizing amino acids in...
 How immunohistochemistry is...
 Conclusions
 References
 
PEPCK is present in many plant tissues in which its function is uncertain
In the cytosol of plant cells PEPCK catalyses the ATP-dependent decarboxylation of oxaloacetate, a reaction that lies at an important interface between lipid, amino acid, organic acid, and sugar metabolism. Perhaps a reflection of the importance of this reaction in plant metabolism is the finding that the activity of PEPCK is regulated by an elegant mechanism that involves reversible protein phosphorylation (Walker and Leegood, 1995Go; Walker and Leegood, 1996Go; RP Walker et al., unpublished data). For many years two clearly defined roles for PEPCK in plant metabolism have been known, as a decarboxylase both in the C4 cycle in one subgroup of C4 plants and in many CAM plants (Hatch et al., 1975Go; Dittrich et al., 1973Go) and in catalysing the gluconeogenic flux from lipids and protein in germinating seeds (Benedict and Beevers, 1961Go; Stewart and Beevers, 1967Go). Recently, PEPCK was found to be present in a large range of plant tissues such as leaves of a number of C4 grasses, including maize, belonging to the NADP-ME group of C4 plants (Walker et al., 1997Go), in developing seeds, in ripening fruit, in vascular tissues and in leaves of C3 plants (Leegood and Walker, 1999Go; Leegood et al., 1999Go; Walker et al., 1999Go). Similarly, in animals, PEPCK is present in many tissues in which its function is uncertain (Zimmer and Magnuson, 1990Go; Hanson and Reshef, 1997Go). It seemed likely that knowing the location of PEPCK in plant tissues would be of assistance in understanding its function.

Choice of localization technique
For the study of PEPCK function a technique was required that could be used with a wide range of species and tissues and would show the location and abundance of the protein. An advantage of immunohistochemistry is that it reveals the location and abundance of the protein whereas visualization of mRNA by in situ hybridization may not. This is because the abundance of a protein and the mRNA encoding it are not always correlated (Oliveira et al., 1997Go; Ruan et al., 1997Go) and mRNA may be synthesized in different cells from where the protein is present (Kühn et al., 1997Go). Immunohistochemistry was routinely used, however, in situ hybridization (Fig. 1CGo) was also used as its main purpose was to confirm any results obtained were not artefactual. For immunohistochemistry wax embedded sections fixed using 2% (v/v) formaldehyde were used, this procedure gave good preservation of antigenicity and possessed sufficient resolution for determining intracellular compartmentation (Walker et al., 1999Go). Antigen was visualized using a phosphatase-linked second antibody in conjunction with a coloured dye reaction which gave good resolution visible using a standard light microscope (Walker et al., 1999Go). Similar considerations apply to in situ hybridization.

Assessing the specificity of staining in immunohistochemistry
It is essential to evaluate whether signals observed in immunohistochemistry are due to the presence of the target antigen. Perhaps the most important factor in avoiding artefacts in immunohistochemistry is the specificity of the antiserum. On blots of SDS-PAGE gels the molecular weight of immunoreactive polypeptides can be compared with that of the target polypeptide. On the other hand, the molecular weight of antigens visualized in immunohistochemistry is unknown which makes it more difficult to assess specificity. One check is to determine specificity for the target protein on blots of SDS-PAGE gels loaded with an extract of the tissue used in immunohistochemistry (Chen et al., 2000Go). The antiserum used in this study was raised against the 62 kDa fragment of PEPCK purified from cotyledons of germinating cucumber which shows high sequence similarity to PEPCK from other angiosperms and yeast (Walker et al., 1995Go). When used at a dilution of 1:1000 this antiserum recognized PEPCK specifically in extracts of most plant tissues when its abundance was only 0.01% of total protein and also recognized the enzyme from every angiosperm and gymnosperm tested as well as PEPCK from yeast (data not shown). The dilution of the antiserum is often important in determining specificity on blots of SDS-PAGE gels, if it is too concentrated non-specific bands may appear. In immunohistochemistry a range of dilutions of the antiserum should be tested to determine whether a similar pattern of staining occurs. A further check of specificity is to confirm results obtained by immunohistochemisty using a different technique. One way is microdissection of the tissue, in which the antigen was localized using immunohistochemistry, and immunoblot analysis or activity measurements of extracts of the dissected tissue. This approach confirmed that PEPCK is present in trichomes in cucumber leaves (Chen et al., 2000Go). Another way is to show a similar distribution of mRNA by in situ hybridization and protein by immunohistochemistry as shown for PEPCK in maize leaves (Fig. 1CGo). A further check of specificity is to show that the antiserum labels specifically a tissue in immunohistochemistry in which the antigen is known to be abundant. For example, PEPCK is very abundant in the bundle sheath of leaves of some C4 grasses and an antiserum raised to PEPCK only labelled this tissue (Walker et al., 1997Go; Fig. 1CGo). On the other hand, an antiserum to phosphoenolpyruvate carboxylase (EC 4.1.1.31; PEPC; Famiani et al., 2000Go), an enzyme which is very abundant in the mesophyll of maize, only labelled this tissue (Fig. 1CGo). Similarly, in developing grape seeds the amount of staining in immunohistochemistry correlated with the abundance of PEPCK at different stages of development (Walker et al., 1999Go). It is also important to show that serum taken from the animal before immunization does not contain antibodies that give rise to staining on immunoblots of SDS-PAGE gels or in immunohistochemistry. To illustrate this point it was found that in stems and petioles of several species of the Umbelliferae, such as celery, the antiserum only labelled a layer of cells that line a system of ducts which ramify throughout the plant body (Esau, 1936Go). However, immunoblots of SDS-PAGE gels and measurements of PEPCK activity failed to detect PEPCK in these tissues. It was found that the preimmune serum labelled these cells showing that staining was not due to the presence of PEPCK (data not shown). Another cause of artefactual staining is the tissue section itself generating a signal. Peroxidase-linked second antibodies were found to be unsuitable because peroxidases present in plant tissues were not inactivated by the fixation and embedding procedures used (Walker et al., 1999Go). In our hands phosphatase-linked second antibodies did not present this problem, neither did they bind to sections not incubated with primary antiserum.

PEPCK is enriched in tissues active in the metabolism of nitrogen
Using immunohistochemistry it was found that, in many plants, PEPCK was present in tissues that are likely to be active in the metabolism of nitrogen, such as developing seeds and the vasculature, and in these it was particularly abundant in regions where metabolism of amino acids is likely to be enhanced (Walker et al., 1999Go). In developing grape seeds PEPCK was present within the vasculature of the seed, the chalaza which adjoins the developing storage tissues and in a layer of specialized cells, termed the palisade, which is thought to be involved in both metabolism and distribution of imported assimilates before uptake by the developing storage tissues (Walker et al., 1999Go). In the palisade it was most abundant when the rate of storage protein deposition was greatest and the abundance was greatly influenced by the form of nitrogen supplied to the seeds during in vitro culture (Walker et al., 1999Go). Similarly, in maize PEPCK was abundant in the pedicel (data not shown), a tissue where amino acids are metabolized before import into the kernel (Muhitch et al., 1995Go). In pea, amino acids undergo extensive metabolism within the pod before transport into the seed (Murray and Cordova-Edwards, 1984Go) and PEPCK was particularly abundant in the vasculature of the pod (data not shown). A similar situation is found in fruit such as peach (data not shown) and grape (Fig. 2Go) where PEPCK is present in the vasculature where it may be involved in transformations of amino acids before redistribution to the seed.



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Fig. 2. Localization of PEPCK and PEPC by immunohistochemistry. Grape berries (Vitis vinifera L. cv. Pinot noir) were from vines growing in the vineyard of the University of Perugia. The section showing the ripening berry was from a berry 50 d after full bloom (50% of flowers open) and the section showing the base of the berry was from a berry 10 d after full bloom. Maize roots were from plants grown in hydroponic culture on ammonium for 7 d (see legend Fig. 3BGo). Transverse sections were cut and antigen visualized using specific antisera at a dilution of 1:1000. The blue/black coloration indicates the presence of antigen. The section illustrating structure was stained with Safranin/Astra blue. E, endodermis; CO, cortex; P, pericycle; V, vascular bundle; X, xylem. The immunohistochemical methods used were described earlier (Walker et al., 1999Go).

 
In leaves and stems of grape and cucumber PEPCK is associated with the phloem (Leegood and Walker, 1999Go), however, in barley and tobacco, grown on nitrate it is not. A particularly striking example is provided by cucumber in which PEPCK is abundant in companion cells of the extrafascicular phloem (Chen et al., 2000Go). The vasculature of curcurbits is unusual because the extrafascicular phloem ramifies throughout the plant and is not contained within vascular bundles (Esau, 1965Go). The function of the extrafascicular phloem has remained uncertain, however, evidence has recently been provided that it is involved in the transport of amino acids (Leegood et al., 1999Go). In ammonium-fed roots of a range of plants PEPCK was associated with the vasculature (see below). In cucumber and tobacco PEPCK was present in trichomes (Leegood et al., 1999Go) and in Clusia aripoensis in cells lining the latex producing ducts (Borland et al., 1998Go). These tissues may be involved in the protection of the plant from herbivores and are often rich in secondary metabolites (Gershenzon et al., 1989Go). Reassimilation of ammonium released by the action of phenylalanine ammonium lyase, which is important in the synthesis of many secondary metabolites is likely to occur in these tissues.

Immunohistochemistry proved to be useful in developing our understanding of the function of PEPCK in plants because it showed that PEPCK was present in many tissues likely to be active in the metabolism of nitrogen. However, to investigate what, if any, this function might be in nitrogen metabolism required immunohistochemistry to be used in combination with other approaches. Similarly, although the location of PEPCK has been determined by immunohistochemistry in many mammalian tissues (Zimmer and Magnuson, 1990Go), immunohistochemistry alone has not allowed its functions to be determined and the function of PEPCK in most mammalian tissues remains unknown (Hanson and Reshef, 1997Go). This is perhaps a reflection of the difficulty of elucidating enzyme function since PEPCK has been extensively studied in animals (Hanson and Reshef, 1997Go). This difficulty in understanding enzyme function may be a reflection of our lack of understanding of many metabolic processes.



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Fig. 3. (A) PEPCK is induced in roots fed ammonium. Barley (Hordeum vulgare L. cv. Maris mink), turnip (Brassica rapa L. cv. Snowball), maize (Zea mays L. cv. H511), and tomato (Lycopersicon esculentum Mill. cv. Gold Star) and were grown in perlite under a 12 h photoperiod and an illumination of 200 µmol quanta m-2 s-1 at 25 °C. Three-week-old seedlings were watered with a solution of either 5 mM NH4Cl, pH 5.5 or 5 mM KNO3, pH 5.5 each day for 7 d. At each watering, plants were given enough liquid so that at least 50 ml of liquid flushed through the pot, which was then left to drain until the next watering. Roots from 10 plants were taken and pooled. The abundance of PEPCK in roots was assessed by an immunoblot of an SDS-PAGE gel (Walker and Leegood, 1996Go). Loadings on the gel correspond to the protein content of 5 mg of tissue and the antiserum was used at a dilution of 1:1000. (B) Changes in the abundance of enzymes in maize roots during growth on ammonium. Maize was grown in hydroponic culture in a greenhouse in Sheffield during the summer using the 100% nitrate culture medium (4 mM nitrate) (Santamaria and Elia, 1997Go) through which air was bubbled. Three weeks after germination the solution was changed to the 100% ammonium culture medium (4 mM ammonium) (Santamaria and Elia, 1997Go) at pH 5.5 through which air was bubbled. This solution was changed each evening. Roots from three plants were taken each day, pooled, frozen in liquid nitrogen and stored at -80 °C. PEPCK, PEPC and NADP-ME were visualized on immunoblots of SDS-PAGE gels. Loadings on the gel correspond to the protein content of 5 mg of tissue and antisera were used at a dilution of 1:1000. PEPCK and PEPC activity in extracts of roots was measured and is shown as the mean±SE of three separate extractions. One unit of activity is defined as 1 µmol of product produced min-1 at 25 °C. The biochemical methods used are described elsewhere (Walker and Leegood, 1996Go; Walker et al., 1999Go).

 
Altering the nitrogen metabolism of roots changes the abundance of PEPCK
The association of PEPCK with many tissues active in the metabolism of nitrogen raised the possibility that PEPCK may have a role in nitrogen metabolism. If so, how should this role be determined? One approach is to determine whether the abundance of PEPCK is altered by changes in nitrogen metabolism and a good way to do this is to feed roots different forms of nitrogen such as ammonium or nitrate. Feeding NH4Cl as opposed to KNO3 led to a large increase in the abundance of PEPCK in the roots of several plants (Fig. 3AGo) much less being induced in the shoot tissues (data not shown).

It is well established that presenting NH4+/NH3 to a wide range of organisms may result in changes in the internal pH of their tissues (Boyarsky et al., 1988Go; Pollock 1989Go; Gerendás and Ratcliffe, 2000Go). The effect of supplied NH4+/NH3 on intracellular pH is complex and dependent on a number of factors such as the pH of the external medium, which alters the ratio of NH4+:NH3, type of tissue and the duration of feeding. For example, in tissue culture experiments using mammalian cells NH4Cl is often used to induce intracellular acidosis (Boyarsky et al., 1988Go). On the other hand, presenting NH4+/NH3 at alkaline pH to maize root tips results in intracellular alkalinization because of a rapid influx of NH3 by free diffusion and its subsequent protonation (Gerendás and Ratcliffe, 2000Go). In contrast, presenting NH4+/NH3 at pH 5.0 resulted in no change in cytosolic pH in maize root hairs (Kosegarten et al., 1997Go). After absorption of NH4+/NH3, its subsequent metabolism is thought to release protons (Raven and Smith, 1976Go; Raven, 1988Go; Bungard et al., 1999Go) a process that has been proposed to lead to the lowering of cytoplasmic pH in maize root tips grown on acidic media (Gerendás et al., 1993Go). The pH of extracts of maize roots, shown in Fig. 3BGo fed 4 mM ammonium for 7 d as opposed to 4 mM nitrate, prepared by homogenizing 0.1 g of root in 1 ml of water were lower by about 0.5 pH units. This raised the possibility that the appearance of PEPCK in roots fed ammonium was related to a lowering of intracellular pH within the root.

Some support for this idea is provided by the observation that in many mammalian and bird species cytosolic PEPCK is induced in the kidney in response to acidosis resulting from either oral administration of NH4Cl, starvation or diabetes (Watford, 1989Go; Mapes and Watford, 1989Go; Pollock, 1989Go). The promoter of cytosolic PEPCK from mammals contains elements that increase its transcription in response to acidosis (Holcomb et al., 1996Go; Cassuto et al., 1997Go). In the proximal tubule cells of the kidney of acidotic mammals deamination of glutamine and glutamate releases NH4+, NH3 then diffuses into the tubule to titrate the acidity of the urine (Hanson and Patel, 1993Go). In the tubule cell the anionic products of ammoniagenesis are then converted to neutral compounds which removes protons from the organism (Silbernagl and Scheller, 1986Go). Co-ordinate with the induction of PEPCK in rat kidney, the malate pool declined, on the other hand in dog kidney, in which PEPCK is not induced by acidosis, malate content increased several fold, suggesting that PEPCK is involved in malate dissimilation (Vinay et al., 1980Go). The importance of PEPCK in the acidotic kidney is illustrated by the observation that feeding the inhibitor of PEPCK, 3-mercaptopicolinate, led to a virtual abolition of ammonia formation in the acidotic kidney of rat (Bennett and Alleyne, 1976Go).

Other treatments that cause acidification of plant tissues induce PEPCK
To investigate whether the presence of PEPCK was related to acidification, a means of acidifying plant tissues was needed that was less dependent on nitrogen metabolism. This was done in two ways, either by placing plants in an atmosphere containing 5% CO2 (although this will affect nitrogen metabolism associated with photorespiration) or by feeding roots 1 mM butyric acid. These treatments are known to cause acidification of both plant and animal tissues (for review see Kurkdjian and Guern, 1989Go). In a range of plant species 5% CO2 caused an induction of PEPCK in the leaves (Fig. 4AGo) and butyric acid caused an induction of PEPCK in the roots (Fig. 4BGo) and in neither was there an increase in the abundance of NADP-ME as detected by immunoblots of SDS-PAGE gels (data not shown) using an antibody specific for NADP-ME (Langdale et al., 1988Go). These results suggested that in these tissues PEPCK may appear in response to acidification.



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Fig. 4. PEPCK is induced in leaves by placing them in an atmosphere containing 5% CO2 (A) and in roots by feeding them 1 mM butyric acid (B). Maize, turnip, tomato, and barley (cultivars as Fig. 3Go) were grown in perlite under a 12 h photoperiod at an illumination of 200 µmol quanta m-2 s-1 at 25 °C. (A) Three-week-old seedlings were placed in an atmosphere containing either 0.03% or 5% CO2 for 5 d under a 12 h photoperiod at an illumination of 200 µmol quanta m-2 s-1 at 25 °C. Leaves from three plants were then taken and pooled. (B) Three-week-old seedlings were watered with a solution of 1 mM butyric acid pH 5.5 and placed under a 12 h photoperiod at an illumination of 200 µmol quanta m-2 s-1 at 25 °C. After 36 h roots from 10 plants were taken and pooled. The abundance of PEPCK was assessed by both activity measurement and immunoblots of SDS-PAGE gels. Activity measurements are the mean of three separate extractions and one unit of activity is defined as 1 µmol of product produced min-1 at 25 °C. Loadings on the gel correspond to the protein content of 5 mg of tissue and the antiserum was used at a dilution of 1:1000. The biochemical methods used are described earlier (Walker and Leegood, 1996Go; Walker et al. 1999Go).

 

Does PEPCK have a role in regulating intracellular pH?
Having shown that PEPCK is induced in several tissues that are likely to be acidotic the authors investigated whether PEPCK might have a function in acidotic tissues. This was done by using immunohistochemistry to localize PEPCK in maize root fed ammonium. It is thought that plant cells regulate their pH in two main ways, by proton coupled pumps at the plasma membrane and by a biochemical pH stat (Davies, 1986Go; Sakano, 1998Go). The biochemical pH stat involves the synthesis and often transport of malate between tissues followed by its decarboxylation. It is proposed that PEPC is responsible for the synthesis of malate and NAD(P)-malic enzyme for its decarboxylation (Davies, 1986Go). The decarboxylation of malate, subsequent respiratory oxidation of NADH (produced by the reaction of malic enzyme) and accompanying oxidative phosphorylation is a process which consumes protons (Sakano, 1998Go). As an example, leaves that are assimilating nitrate produce OH- as a consequence of the nitrate reductase reaction, malic acid is synthesized by PEPC in the leaf and malate is exported to the root as the neutral salt, this leaves protons behind in the leaf to neutralize alkalinity (Touraine et al., 1992Go). Similarly, acidification of plant cells often results in a rapid decrease in their malate content, and the consumption of protons associated with the decarboxylation of malate is proposed to counteract acidity (Mathieu et al., 1986Go; Sakano et al., 1998Go). The importance of the decarboxylation of organic acids in neutralizing acidity is also illustrated by the fact that the major source of alkali in the human diet are salts of organic acids contained in fruit whose decarboxylation produce alkalinity (Ganong, 1977Go).

A possibility is that in acidotic tissue PEPCK functions to decarboxylate oxaloacetate, which is derived from malate by the action of malate dehydrogenase (the conversion of malate to oxaloacetate produces NADH). This process would consume protons in a similar way to the malic enzyme reaction and PEPCK might therefore be functioning as a decarboxylase in the biochemical pH stat. This was investigated in more detail in maize. Supplying ammonium to maize roots led to a very large induction of PEPCK (Fig. 3BGo) and its specific activity (0.3 units activity mg-1 protein; 1 unit of activity is defined as 1 µmol of product produced min-1 at 25 °C) was similar to that in maize leaves in which it functions as a decarboxylase in the C4 cycle (Wingler et al., 1999Go). In the absence of ammonium PEPCK could not be detected (Fig. 3BGo). The abundance of PEPC also increased in these roots whereas the abundance of NADP-ME, which is proposed to act as the decarboxylase in the biochemical pH stat, declined (Fig. 3BGo). Immunohistochemistry showed PEPCK to be very abundant in the pericycle, a layer of cells enclosed by the endodermis (Fig. 2Go), in contrast, PEPC was more abundant in the cortex (Fig. 2Go; for structure see Esau, 1965Go). In roots not fed ammonium PEPCK was not detected in the pericycle in immunohistochemistry (data not shown). Preimmune sera for both antisera to PEPCK and PEPC did not give rise to a signal and in situ hybridization showed PEPCK mRNA to be localized in the pericycle (data not shown).

Feeding ammonium to rice roots results in a rapid induction of NADH-dependent glutamate synthase in the epidermis and exodermis, the two cell layers of the root surface. The presence of NADH-dependent glutamate synthase and glutamine synthase, together with the observation that rice root possesses a Casparian strip between the exodermis and cortex which may restrict apoplastic movement of water and solutes absorbed from the soil, suggests that a large proportion of ammonium is assimilated in these tissues (Ishiyama et al., 1998Go; Tobin and Yamaya, 2001Go). In maize roots grown in hydroponic culture, and therefore lacking an exodermis (Zimmermann et al., 2000Go), water and solutes may move through the apoplast in the outer cortical regions of the root before reaching the endodermis, which may limit water and solute flow to some extent. The pH of the apoplast of the cortex of maize roots is maintained at around pH 5 in the presence of either nitrate or ammonium and when the pH of the solution external to the roots is as high as 8.6 (Kosegarten et al., 1999Go). At pH 5.0 a large proportion of the ammonium within the apoplast of the root would be available as NH4+ and would not cause intracellular alkalinization (see above). It is possible that a proportion of ammonium fed to maize roots enters the symplast at the endodermis and is incorporated into amino acids within the pericycle which results in it becoming acidotic. Extrusion of protons from the pericycle may not be effective in their removal to the soil because of the potential barrier to apoplastic movement at the endodermis. The function of PEPCK in the pericycle of maize could be, in concert with malate dehydrogenase, to decarboxylate malate and hence neutralize acidity by consuming protons. The observation that PEPC is most abundant in the cortex raises the possibility that a proportion of malate is synthesized in the cortex by PEPC and then transported to the pericycle as the neutral salt which is then decarboxylated by PEPCK, a mechanism which is similar in some ways to the C4 photosynthetic cycle of maize leaves (Fig. 1CGo).

The question arises as to whether PEPCK might be involved in pH regulation in other tissues active in the metabolism of nitrogen such as developing seeds. PEPCK is abundant in many developing seeds such as grape in which its abundance correlates with both the rate of storage protein synthesis and form of amino acid supplied to the seed (Walker et al., 1999Go). In pea pods, imported amino acids are metabolized to different forms before export to the developing seed (Murray and Cordova-Edwards, 1984Go). In the vasculature of pea pod and other fruits such as peach and grape (Fig. 2Go) PEPCK is very abundant. A possibility is that in the vasculature of fruit tissues and the maternal tissues of some seeds such as grape (Walker et al., 1999Go) amino acids are converted to forms whose subsequent metabolism within the developing filial tissues of the seed does not lead to perturbations in pH. Similar to roots, a possibility is that within the maternal tissues of the developing seed and the vasculature of the fruit PEPCK might function as a decarboxylase in the biochemical pH stat.


    Conclusions
 Top
 Abstract
 Introduction
 Localizing amino acids in...
 How immunohistochemistry is...
 Conclusions
 References
 
In this article it has been shown how immunohistochemistry is useful in determining the location of both amino acids and enzymes in plant tissues and how knowing the location of an enzyme helps us to understand both its function and the functioning of plant tissues. The example of PEPCK was used, an enzyme which has recently been shown to be present in many plant tissues in which its function is uncertain. Using immunohistochemistry in conjunction with biochemical approaches preliminary evidence was provided that PEPCK may be involved in the regulation of intracellular pH in tissues active in the metabolism of nitrogen. If PEPCK does act as a decarboxylase in the biochemical pH stat, then this raises the possibility that, as in C4 photosynthesis, either PEPCK, NAD-malic enzyme or NADP-malic enzyme may be used to decarboxylate organic acids, which one is used may depend on the tissue and the cause of acidosis.


    Acknowledgments
 
This research was supported by a BBSRC David Phillips Fellowship (RPW), a BBSRC Studentship to RPW (KEJ) and Research Grants CO5229 and RSP07804, and by the CNR (National Research Council of Italy) (FF).


    Notes
 
3 Joint first authors. Back

4 To whom correspondence should be addressed. Fax: +44 114 2220002. E-mail: rob.walker{at}sheffield.ac.uk Back


    Abbreviations
 
PEPC, phosphoenolpyruvate carboxylase; PEPCK, phosphoenolpyruvate carboxykinase; NADP-ME, NADP-malic enzyme.


    References
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 Abstract
 Introduction
 Localizing amino acids in...
 How immunohistochemistry is...
 Conclusions
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