Journal of Experimental Botany, Vol. 52, No. 359, pp. 1165-1172,
June 1, 2001
© 2001 Oxford University Press
Original Papers |
Antibodies to assess phosphorylation of spinach leaf nitrate reductase on serine 543 and its binding to 14-3-3 proteins
Julius-von-Sachs-Institut für Biowissenschaften, Lehrstuhl für Molekulare Pflanzenphysiologie und Biophysik, Julius-von-Sachs-Platz 2, D-97082 Würzburg, Germany
Received 11 August 2000; Accepted 14 January 2001
| Abstract |
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To monitor site-specific phosphorylation of spinach leaf nitrate reductase (NR) and binding of the enzyme to 14-3-3 proteins, serum antibodies were raised that select for either serine 543 phospho- or dephospho-NR. The dephospho-specific antibodies blocked NR phosphorylation on serine 543. The phospho-specific antibodies prevented NR binding to 14-3-3s, NR inhibition by 14-3-3s, NR dephosphorylation on serine 543, and did not precipitate 14-3-3s together with NR. Together, this confirms that 14-3-3s bind to NR at hinge 1 after it has been phosphorylated on serine 543. The amounts of individual NR forms were determined in leaf extracts by immunoblotting and immunoprecipitation. The phosphorylation state of NR on serine 543 increased 23-fold in leaves upon a light/ dark transition. Before the transition, one-third of NR was already phosphorylated on serine 543 but was not bound to 14-3-3s. Phosphorylation of serine 543 seems not to be enough to bind to 14-3-3s in leaves.
Key words: 14-3-3 proteins, nitrate reductase, protein phosphorylation, protein:protein interactions, enzyme inhibition.
| Introduction |
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The metabolic enzyme nitrate reductase (NR; EC 1.6.6.1) is regulated by a phosphorylation-dependent binding to 14-3-3 proteins (MacKintosh et al., 1995
Clearly, binding to 14-3-3s and NR phosphorylation need to be examined independently and directly in order to understand the regulation of NR more fully. The classical and most direct way to assess the phosphorylated state of a particular site in a protein involves metabolic labelling, fragmentation of the protein, and mapping of the phosphopeptides (van der Geer et al., 1998
). This procedure is often time-consuming, tedious to perform and requires proper facilities. More recent developments in mass spectrometry allow the detection of site-specific phosphorylation in proteins without radiochemical labelling (Resing and Ahn, 1997
). This requires rather expensive equipment, however. A convenient alternative to these procedures is a technique that relies on antibodies that can recognize if a certain residue in a protein is phosphorylated or not (Czernik et al., 1991
; Weiner, 1995
; Ueno et al., 2000
). Here, such a technique was used, NR phosphorylation or dephosphorylation on serine 543 was examined and how this affects NR binding to 14-3-3s was investigated.
| Materials and methods |
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Materials, extraction, NR activity assay
Growth of spinach, protein extraction from leaves (10 mg ml-1 buffer), desalting over Sephadex G25 (medium grade), and NR activity assays in the presence of 10 mM MgCl2 or 15 mM EDTA (3 min assays without preincubation of the extract) were done as previously (Kaiser and Huber, 1997
Protein purification and detection, antibody production
Gel electrophoresis (Laemmli, 1970
), Western transfer and immunodecoration were as described earlier (Weiner, 1995
). To determine the relative amount of NR or 14-3-3s, immunoprecipitated, partially purified or crude proteins (0.055 µg) were gel-fractionated in parallel to serial dilutions of purified NR or 14-3-3s. NR or 14-3-3 polypeptides were then measured densitometrically (Image Master, Pharmacia, Uppsala, Sweden) after they were stained with Coomassie Brilliant Blue R 250 or blotted and immunodecorated. The relative amount of NR or 14-3-3s was eventually read from standard curves of the purified proteins.
Serum antibodies were raised in rabbits (New Zealand Whites). Peptide antigens were made by linking synthetic peptides (DRQYHPAPMSGVVRTP, close to the N-terminus of NR) to Keyhole limpet haemocyanin (Harlow and Lane, 1988
) or (GPTLKRTASTPFMNTTS, around serine 543 of NR, S-peptide; GPTLKRTADTPFMNTTS, D-peptide) to partially purified protein derivative of tuberculin (Weiner, 1995
). Antisera to 14-3-3s were raised using purified 14-3-3s as antigen. They were purified from spinach leaves (Bachmann et al., 1996
a). Immunoprecipitation of NR was done with immobilized antibodies (Weiner and Kaiser, 1999
), using antisera to the N-terminus or to the D- or S-peptide. All NR antibodies cross-reacted only with a single 110 kDa band, since such band was not recognized in the presence of antigenic peptides. 14-3-3-free NR preparations that contained NR-kinase and NR-phosphatase were partially purified with polyethylene glycol and by ion exchange chromatography (Bachmann et al., 1996
b).
Tryptic NR fragments, oxidation with performic acid and phosphopeptide mapping on cellulose thin-layer plates with a Hunter HTLE 7000 apparatus were done as previously (van der Geer et al., 1998
). A synthetic peptide corresponding to residues 535552 of spinach NR was phosphorylated and purified (Bachmann et al., 1996
b).
| Results |
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The peptide antibodies could distinguish between serine 543 phospho- and dephospho-NR
To monitor site-specific phosphorylation and dephosphorylation of NR serum antibodies were raised against two synthetic peptides corresponding to the phosphorylation site of spinach leaf NR around serine 543. One peptide carried a serine residue corresponding to serine 543 as a potential phosphate acceptor. The other peptide had an aspartate instead of the serine residue to provide a stable mimetic of the phosphorylated state. As shown in Fig. 1
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The antibodies prevented NR binding to 14-3-3s, NR phosphorylation and, unlike 14-3-3s, NR dephosphorylation
Next, it was tested whether the peptide antibodies affect NR phosphorylation and dephosphorylation and NR binding to 14-3-3s using partially purified leaf proteins. As one might expect from the specificity of both antibodies (Figs 1, 3
5), the S-antibodies inhibited NR phosphorylation (Fig. 6A
) and the D-antibodies inhibited NR dephosphorylation (Fig. 6B
). Such dephosphorylation was, however, not inhibited by 14-3-3s (Fig. 6B
). NR dephosphorylation was catalysed by a protein phosphatase 2A because less than 1% of the phosphate counts that were released from NR after 20 min were released in the presence of 5 nM okadaic acid.
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The D-antibodies reduced 14-3-3 binding to NR (Fig. 6C
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In leaves, the phosphorylation state of NR on serine 543 increased only moderately upon a light/dark transition
NR is well known to be rapidly phosphorylated, bound to 14-3-3s and inactivated in spinach leaves upon a light/ dark transition. As recently shown, 14-3-3s are bound to NR in extracts from darkened leaves but not in extracts from illuminated leaves (Weiner and Kaiser, 1999
). The amounts of serine 543 phospho- and dephospho-NR before or after a light/dark transition are unknown, however. Based on phosphopeptide mapping (Huber et al., 1992
), only a 23-fold increase in the phosphorylation state of NR on serine 543 upon a light/dark transition was predicted. This was analysed next with the S- and D-antibodies. Crude protein extracts were prepared from illuminated or darkened leaves and immunodecorated phospho- or dephospho-NR on Western blots after the proteins were gel-fractionated and transferred (Fig. 8
; upper panel). In addition, phospho- or dephospho-NR were immunoprecipitated from such extracts (Fig. 8
; lower panel). the proportions of NR forms in leaves were then determined from the change in the amount of each NR form upon the light/dark transition (Appendix). As shown in Table 2, the results matched our prediction: about 1/3 of NR was already phosphorylated on serine 543 before the light/dark transition after which NR became almost fully phosphorylated on this site and bound to 14-3-3s. Notably, most of the phospho-NR was bound to 14-3-3s after, but not before the transition.
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| Discussion |
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Phospho- and dephospho-specific antibodies were raised that allowed the determination of the amounts of individual NR forms in tissues. In addition, the antibodies were suitable for testing NR regulation in vitro (see below). The antibody techniques in Figs 1 and 6
These results confirm that 14-3-3s bind to NR at hinge 1 after it has been phosphorylated on serine 543 (Moorhead et al., 1996
; Bachmann et al., 1996
a). The 14-3-3 complex of NR was possibly not recognized by the D-antibodies (Fig. 7
and Fig. 8
, lower panel) as a result of surface occupancy in the association of NR with 14-3-3s. The 14-3-3s possibly impeded access for the D-antibodies but not for protein phosphatase 2A (Fig. 6B
) to the microenvironment around serine 543. It was observed that 14-3-3s promote the ATP-dependent inactivation of NR in the presence of protein kinases and -phosphatases (Bachmann et al., 1996
b). These authors therefore concluded that 14-3-3s block NR dephosphorylation on serine 543. The results of the direct approach used here to assess such dephosphorylation (Fig. 6B
) does not support such a conclusion, however. Unlike the 14-3-3s, the D- or S-antibodies did not influence NR activity (Table 1
). It is therefore unlikely that the inhibition of NR dephosphorylation by the D-antibodies (Fig. 6B
) or the reduction of 14-3-3 binding to NR (Fig. 6C
) was the result of an indirect conformational effect. Further, the results in Table 1
do not support that hinge 1 region ligands other than 14-3-3s inhibit NR. Given the size and the structural flexibility of the synthetic peptides that were used as antigens, the antibodies did not perhaps bind to the same site in hinge 1 to that which 14-3-3s bind. However, it is also possible that a not yet identified structural feature is involved in NR inhibition by 14-3-3s (Nussaume et al., 1995
; Pigaglio et al., 1999
). Three findings are remarkable in this context: (I) the 14-3-3 binding stoichiometry of NR is almost two 14-3-3 monomers per NR subunit (Weiner and Kaiser 1999
), (II) 14-3-3s are dimers and capable of binding two ligands simultaneously (Shaw, 2000
) and (III) 14-3-3s bind to more than one sequence motif in a phosphorylation-dependent or -independent manner (Petosa et al., 1998
; Masters et al., 1999
). So the next step might be to find out whether or not 14-3-3s bind to NR at a site in addition to hinge 1, even if such a site, unlike the site in hinge 1, cannot simply be predicted from the primary sequence of NR.
The magnesium inhibition of NR (Table 2
) increased as expected upon the light/dark transition (Kaiser and Huber, 1997
). This reflects that all three forms of NR, in particular the 14-3-3 complex, are inhibited by magnesium (Weiner and Kaiser, 2000
). A major portion of NR was phosphorylated on serine 543 in extracts from illuminated leaves but was not bound to 14-3-3s (Table 2
). So, although necessary (Moorhead et al., 1996
; Bachmann et al., 1996
a), phosphorylation of serine 543 seems not to be enough to bind to 14-3-3s in leaves. Why were the 14-3-3s lacking? The reason is unknown. It is perhaps the result of a cellular redistribution of 14-3-3s (Tzivion et al., 2000
) that occurs upon a light/ dark transition in leaves and that, given the abundance of 14-3-3s in leaves (Weiner and Kaiser, 1999
), makes 14-3-3s less available for certain ligands.
| Appendix |
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This appendix develops the theoretical basis for determining the proportions of different NR forms (Table 2
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| Acknowledgments |
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This work was supported by the European Community (EC Bio4-ct-2231) and by the Deutsche Forschungsgemeinschaft WE 1449/4-1. We thank Heike Weiner for the artwork and Professor Nigel M Stitt for making laboratory facilities available to us.
| Notes |
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1 To whom correspondence should be addressed. Fax: +49 931 888 6158. E-mail: weiner{at}botanik.uni\|[hyphen]\|wuerzburg.de
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32P-ATP (3000 cpm pmol-1) to back-phosphorylate NR. Aliquots were taken from the incubation mix during back-phosphorylation as indicated in order to (I) immunodecorate the 110 kDa NR subunit with S- or D-antibodies following fractionation of proteins on 7% Laemmli gels and their transfer to an Immobilon P membrane, and (II) measure the incorporation of label into NR after addition of 2 mM cold ATP, immunoprecipitation of NR with antibodies to the N-terminus, gel-fractionation of the immunoprecipitate, and Cerenkov counting of the gel piece after Coomassie Blue staining and excision from the dried gel. The stoichiometry of NR phosphorylation was 1.0 and 0.90 mol phosphate mol-1 NR in two independent experiments at the end of the time-course.






