Journal of Experimental Botany, Vol. 53, No. 370, pp. 825-833,
April 15, 2002
© 2002 Oxford University Press
Original Papers |
Nitrate transport in plants: which gene and which control?
1 Unité de la Nutrition Azotée des Plantes, INRA, route de St Cyr, 78026 Versailles cedex, France
2 Biological Sciences Department, Lancaster University, Bailrigg, Lancaster LA1 4YQ, UK
3 Compartimentation et Dynamique Cellulaires, Institut Curie, UMR 144, CNRS26 rue d'Ulm, 75248 Paris Cedex 05, France
Received 18 July 2001; Accepted 14 November 2001
| Abstract |
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Nitrate uptake by root cells is a key step of nitrogen metabolism and has been widely studied at the physiological level and, more recently, at the molecular level. Two classes of genes, NRT1 and NRT2, have been found to be potentially involved in the high and low affinity nitrate transport systems (HATS and LATS, respectively). The complexity of the molecular basis of nitrate uptake has been enhanced by the finding that in many plants both NRT1 and NRT2 classes are represented by multigene families. Furthermore, recent studies demonstrate that the control mechanisms that lead to an active protein at the plasma membrane act on gene transcription, modulating the steady-state levels of mRNA, and on the activation of the protein, possibly by a phosphorylation/dephosphorylation process. This is a review of recent progress in the characterization of the NRT2 nitrate transporters, the composition of this family in Arabidopsis, their possible role in nitrate acquisition, and some aspects of their regulation in plants.
Key words: Mutant, multigene family, nitrate transporter, regulation.
| Introduction |
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For most of the cultivated crops, nitrate (
) is the major source of nitrogen. As the first step of the
assimilation pathway,
uptake by root cells is considered to be a key step of N metabolism. Once inside,
can be redirected out of the root cell, either by extrusion in the external medium or by unloading in the xylem vessel to reach the aerial organs (Forde and Clarkson, 1999
takes place in roots or in leaves (Faure et al., 2001
, in roots as well as in leaves, is its uptake by the vacuole where it participates in the general osmoticum or serves as a reservoir to sustain the growth process when the external nitrogen supply becomes limiting (der Leij et al., 1998
influx is an active process (Glass and Siddiqi, 1995
movements within the plant is a prerequisite to a better understanding of the mechanisms that control
absorption and distribution in the whole plant. This review will focus on the identification of a class of genes possibly involved in these processes and the different regulatory controls that lead to the presence of an active transporter at the membrane. A number of other reviews, dealing with various aspects of
transport, have been published recently (Daniel-Vedele et al., 1998| Root nitrate uptake: physiological properties and molecular aspects |
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Among all the fluxes in the whole plant, the passage of
through the plasma membrane of root cells has been intensively studied. Three systems seem to coexist within the cell (Forde and Clarkson, 1999
inducibility or the concentration range of nitrate in the external medium (
ext) at which they operate. The first system operates at low
ext, in the range of 0.2 mM, even if the plants have never been supplied with nitrate. This constitutive high-affinity transport system (cHATS) is completed by another high-affinity system which is inducible by very low
ext (iHATS) (Behl et al., 1988
ext reaches higher values (>1 mM), a low-affinity transport system takes place (Siddiqi et al., 1990
However, in some species, the activity of LATS is enhanced by
supply (Kronzucker et al., 1995
acts as a regulator for its own uptake, a specific property which is not shared with other ion transport systems such as phosphate or sulphate (Smith et al., 2000
uptake. Ammonium, for example, has strong inhibitory effects which can be divided into short-term (within minutes of exposure) or longer-term effects. The former control occurs at the plasma membrane by inhibiting the influx rather than stimulating the efflux and is shown to affect the iHATS rather than the cHATS or LATS (Kronzucker et al., 1999
uptake (Muller and Touraine, 1992
During the last decade, molecular components have been proposed to be involved in the LATS and iHATS. The picture that is emerging from studies of these putative
transporters reveals the existence of two classes of proteins (Forde, 2000
). The NRT2 and NRT1 genes encode the NNP (nitratenitrite porter) and the PTR (peptide transporter) families, respectively. The NRT1 and NRT2 proteins share the same structural topology, with 12 transmembrane domains, distributed in two sets of six helices connected by a cytosolic loop. Beside their common structure, no primary sequence homology is found between the NRT1 and NRT2 classes.
The Chl1 line (Tsay et al., 1993
), affected in the AtNRT1.1 gene from Arabidopsis and the crna clone of Aspergillus nidulans (Unkles et al., 1991
) were the first mutants characterized by a defect in
uptake mediated, respectively, by the LATS and the HATS systems. The conclusion that NRT1 and NRT2 genes code for proteins respectively involved in LATS and HATS was somewhat hasty. Indeed, recent studies demonstrate that AtNRT1.1, initially proposed to encode a LATS component according to heterologous expression experiments in Xenopus oocytes (Huang et al., 1996
; Tsay et al., 1993
), is a dual-affinity
transporter, involved in multiple phases of
uptake (Wang et al., 1999
; Liu et al., 1999
). NRT1 and NRT2 classes contain at least two members inside the same family and sometimes more, depending on the plant species, and recent results obtained on different NRT2 families will be described.
| The multigene NRT2 families |
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As stated above, the first member of the NNP/NRT2 class was identified in a lower eukaryote, the A. nidulans fungus. The crna mutant was isolated on the basis of its resistance to chlorate and was further shown to be affected in
uptake in the conidiospore and young mycelium stages (Unkles et al., 1991
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This PCR approach followed by Southern studies revealed that in most species, the NRT2 genes are present in the genome in at least two copies (e.g. N. plumbaginifolia (Quesada et al., 1997
versus glutamine nutrition (Filleur and Daniel-Vedele, 1999
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The evolution of multigenic families involves multiple mechanisms, from the duplication of an ancestral gene to the functional specification of each protein. Despite the indications that such comparative analysis gives on their specific role, complementary approaches are necessary to elucidate the functions of each member of a multigene family.
| The function of NRT2 genes |
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There seems to be no clear borderline between the HATS/NRT2 and the LATS/NRT1 systems. As AtNRT1.1 is involved in both systems, one could wonder whether or not certain NRT2 members might play a role in LATS activities. Furthermore, physiological studies unravelled a constitutive component of the HATS, but the existence of the corresponding locus in Arabidopsis is only supported by genetic data (Wang and Crawford, 1996
in the whole plant.
The organ specificity of expression of a gene can give some indications of its role and can be easily tested by northern or, particularly in case of multigenic families, by RT-PCR analyses. In higher plants, the NRT2 genes isolated so far are preferentially expressed in roots. In tomato, no LeNRT2 expression is observed in whole shoots or leaves (Ono et al., 2000
) while in N. plumbaginifolia, NpNRT2 transcripts are also detected at low levels in leaves, petioles, buds, flowers, and seeds (Quesada et al., 1997
). In Arabidopsis, RT-PCR using specific primers for AtNRT2.1 and AtNRT2.2 reveals that the expression of the two genes in young seedlings appears 10 d after sowing, but is not detectable earlier (Zhuo et al., 1999
). The same approach has been applied to RNA extracted from different organs of mature plants using specific primers for each of the seven Arabidopsis genes (M Orsel et al., unpublished results). These experiments give a picture in which genes like AtNRT2.1, AtNRT2.2 and AtNRT2.4, although expressed at different levels, show similar patterns of root predominant expression. In contrast, it seems that AtNRT2.7 is preferentially expressed in shoots, suggesting a role in leaf
uptake. The cellular localization of NRT2 transcripts has been done only in N. plumbaginifolia. The accumulation of mRNA levels is maximum in epidermal and endoderm cells near the root tip while it remains at detectable level only in epidermal or lateral root primordia when moving upward along the root axis (Krapp et al., 1998
). It is noteworthy that for NRT1 genes, cellular localization has been performed only on AtNRT1.1 in Arabidopsis (Huang et al., 1996
). One explanation for this lack of data could be the low sensitivity of the technique, together with the difficulty of designing specific probes for each member of the family.
Chlorate resistance screens allowed the isolation of a
transport defective mutant in A. nidulans followed by the identification by complementation of Crna as the first gene coding for a high-affinity nitrate transporter (Unkles et al., 1991
). In the alga Chlamydomonas, mutant strains defective in
transport and displaying an active NR have been genetically constructed. Complementation of the
non-utilizing phenotype is directly achieved by co-transformation with the CrNRT2 and Nar2 genes (Quesada et al., 1994
). These experiments lead to the identification of four genes coding for mono- or bispecific nitrate/nitrite high-affinity carriers (Galvan and Fernandez, 2001
). Unfortunately, the chlorate resistance screen used on higher plants results only in the isolation of mutants affected in nitrate reductase activity, LATS or HATS activities or a regulatory mutant (Hoff et al., 1994
; Lin and Cheng, 1997
; Tsay et al., 1993
; Wang and Crawford, 1996
). iHATS system might not be involved in chlorate uptake in plants (Touraine and Glass, 1997
) and this would explain why no NRT2 mutant has been isolated using this screen. In fact, overexpression of a NpNRT2.1 in wild-type N. plumbaginifolia plants (Fraisier et al., 2000
) did not increase the sensitivity of transgenic plants to chlorate (V Fraisier, personal communication).
For many transmembrane proteins, heterologous expression is one of the most suitable approaches to elucidate their functions. This could involve the expression in a yeast mutant, which is defective for an analogous transport system (Gazzarrini et al., 1999
). In this way, the barley HvNRT2.1 and HvNRT2.2 cDNAs were used to complement a ynt1
uptake mutant of the yeast Hansenula polymorpha. This complementation is only partial because, for unknown reasons, the
uptake activity of the transformants is very low compared to the wild type (Forde, 2000
). The injection into insect cells or Xenopus oocytes followed by electrophysiological measurements has been successfully used to establish the kinetic properties of different carriers, including NRT1 proteins (Huang et al., 1996
; Zhou et al., 1998
). However, positive results for NRT2 transporters were achieved only with the Crna or CrNRT2 genes from A. nidulans and C. reinhardtii. In the latter case, the co-injection in oocytes of CrNRT2.1 and Nar2, a gene belonging to the same nitrate-regulated gene cluster, is required to obtain detectable elecrophysiological signals and to produce a functional HATS system (Zhou et al., 2000
). There are already several examples of transport systems that require two genes for functional activity. A Nar2 homologous gene might exist in plants that would be required for successful heterologous expression and essential for transport activity in plants.
Reverse genetics, as part of the toolbox for functional genomics by abolishing gene function (i.e. by knockout), was recently the matter of intensive research (Bouchez and Hofte, 1998
). Because of many illegitimate recombination events, the control of homologous recombination in plants has proven to be very difficult, although some success has been reported (Kempin et al., 1997
). At a large scale, homologous recombination in plants is only available in the moss Physcomitrella patens (Schaefer, 2001
), so that gene-disruption methods were designed and many large populations mutagenized with an insertion element (transposons or T-DNA) have been derived from Arabidopsis (Bouche and Bouchez, 2001
). Using an oligonucleotide located in the 3' region of the AtNRT2.1 in combination with a T-DNA primer, one single positive plant was identified among 30000 lines independently transformed by Agrobacterium tumefaciens (Filleur et al., 2001
). This mutant is a null mutant both for AtNRT2.1 and AtNRT2.2 genes, because a large deletion of 25 kb occurs, leading to the entire loss of the AtNRT2.1 gene and of a part of the AtNRT2.2 gene. In this Atnrt2-A mutant, the AtNRT2.1 and AtNRT2.2 mRNAs are thus no longer detectable whatever the [
]ext or the nutritional status of the plant. As a consequence, the activity of HATS is strongly reduced in the mutant as compared to the wild type, with a calculated Vmax in the mutant representing only 27% of that of the wild type. By contrast, once this influx corresponding to HATS activity was subtracted from total
influx measurements, no significant difference was found between the two genotypes. This result demonstrates that LATS activities are not disturbed in the mutant and that both AtNRT2.1 and AtNRT2.2 genes are probably not involved in the LATS system, at least under these experimental conditions. Such a mutant constitutes a valuable tool to assign a precise function to plant NRT2 genes in the global
transport process. A cDNA coding for N. plumbaginifolia NpNRT2.1 protein, driven by the 35S or the more root-specific RolD promoters, was introduced by transformation in this Atnrt2-A mutant. Root influxes were measured in three independent transformants showing different levels of the transgene expression. Wild-type influx is nearly fully restored in the genotype exhibiting the highest level of NpNRT2.1 expression, but decreases and is partially restored in other genotypes following the steady-state levels of NpNRT2.1 mRNA (Filleur et al., 2001
). These results do not, however, demonstrate that the NRT2 protein is directly involved in the transport process. It could, for example, activate another unknown gene or participate to the stability/activity of the transporter itself in association with another protein, as is the case for CrNRT2/NAR2 proteins. Nonetheless, this approach brings out a strong correlation between the inactivation of certain genes and the defect of one component of the HATS or LATS systems.
| Regulation of NRT2 genes |
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The effect of external factors such as [
]ext on N absorption led to the identification of two physiological processes, iHATS and cHATS (Behl et al., 1988
(Lee and Drew, 1986
uptake by plant roots depends not only on external factors but also on the N status of the whole plant (Glass and Siddiqi, 1995
The expression of the NRT2 genes identified so far have been demonstrated to be
responsive, showing a rapid accumulation of mRNA following
induction. The NRT2 genes in N. plumbaginifolia and Arabidopsis were shown to be induced by very low levels of
(1050 µM) (Krapp et al., 1998
; Filleur and Daniel-Vedele, 1999
) to a transient maximum, while in barley, NRT2 mRNAs accumulated to the highest levels when the [
]ext is maintained at 50 µM under quasi steady-state conditions (Vidmar et al., 2000
b). The role of the internal
pool on
influx has been proposed in Lemna by Ingemarsson (Ingemarsson et al., 1987
). They found a reverse correlation between the increase of internal
, following tungstate treatment, and the decrease of
influx. By contrast, the increase of the HvNRT2 transcript level in response to tungstate treatment is not consistent with a possible repressive effect of a high
internal pool. Moreover, this result in barley is in perfect agreement with the overexpression of NpNRT2 genes in N. plumbaginifolia NR-deficient mutants although internal
pools are high in these plants. The fact that NRT2 genes are
inducible in various plants does not imply that they are the components of the iHATS. When non-induced wild type and Atnrt2-A mutants, however, are
supplied, the wild-type plants show a marked induction of AtNRT2.1 expression and HATS-mediated influx while the mutant exhibits only a very limited response (Cerezo et al., 2001
). These data provide the first functional evidence that AtNRT2.1 and/or AtNRT2.2 (that is also deleted in the mutant) are strictly required for the activity of the iHATS. Thus, it seems that the control of the
inducibility of iHATS occurs at the transcriptional levels ruling out the possibility of an
activation of a pre-existing NRT2 protein.
With the exception of NR-deficient mutants (Fraisier et al., 2001
), the induction by
peaks approximately 1 h after the addition of
and thereafter NRT2 mRNA steady-state levels decrease (Krapp et al., 1998
; Filleur and Daniel-Vedele, 1999
; Zhuo et al., 1999
).
influx shows the same transient induction followed by a down-regulation when plants are starved of nitrogen (Lejay et al., 1999
). These regulations are thought to be due to the repression of
transport by reduced N metabolites accumulating in root tissues when plants are under non-limiting nitrogen nutrition. In contrast to the involvement of
in its own uptake, the identification of the signal(s) responsible for feedback regulation of iHATS has been the matter of debate. Root internal
, amino acid or ammonium concentrations, have all been proposed as candidates (King et al., 1993
; Muller and Touraine, 1992
; Siddiqi et al., 1989
). The use of
accumulating mutants (see above) has ruled out the first putative factor. Regarding ammonium or amino acids effects, they both have been demonstrated to inhibit
influx (Kronzucker et al., 1999
; Muller and Touraine, 1992
) without any agreement on which amino acid is most active. NpNRT2 transcript abundance declines when glutamine is fed to roots tissues (Krapp et al., 1998
) while in Arabidopsis, arginine is more effective than asparagine or glutamine, reducing AtNRT2.1 expression levels to 18, 38 and 77%, respectively (Zhuo et al., 1999
). In barley, both
influx and HvNRT2 mRNAs levels decrease in root tissues in response to glutamate, asparagine, arginine, and glutamine, this latter amino acid being the least effective in both processes (Vidmar et al., 2000
b). Furthermore, treatment of root tissue with aza-serine, which inhibits glutamate synthase and led to the accumulation of glutamine within the cell, decreases the HvNRT2 transcript levels by 97% (Vidmar et al., 2000
b). This treatment, however, also affects other parameters such as root ammonium content that increases by 130% and it is well known that exogenous ammonium supply dramatically decreases the
influx as well as the level of NRT2 expression in various species (Krapp et al., 1998
; Lejay et al., 1999
; Amarasinghe et al., 1998
). In the Atnrt2-A mutant, ammonium influx and regulatory mechanisms responsible for ammonium repression are still operating. Despite this, the
influx is no longer repressed by exogenous ammonium supply in the mutant, suggesting that the HATS component under feedback regulation by reduced nitrogen metabolites is the iHATS (Cerezo et al., 2001
).
In some cases, however, this correlation between
influx and NRT2 mRNA abundance was not so clear. Thus, NRT2 transcript levels were found to be high in Glycine max plants continuously fed with high concentrations of
although HATS-mediated
influx appears to be low (Amarasinghe et al., 1998
). In the same way, when N-fed plants are treated with tungstate, an inhibitor of nitrate reductase, root HvNRT2 transcript levels increase by 2030% although
influx is reduced by 44% (Vidmar et al., 2000
b). Evidence for post-transcriptional regulation by a reduced nitrogen source came from physiological studies of transgenic N. plumbaginifolia plants. Indeed, despite a high level of NpNRT2.1 mRNA, driven by the 35S or RolD promoters, exogenous ammonium addition still exerts its repressive effects on root
influx in transgenic plants (Fraisier et al., 2000
). Whether this control occurs at the level of NRT2 protein synthesis (translational control) or in NRT2 protein activity (post-translational control) remains to be established. However, a possible phosphorylation/dephosphorylation mechanism has been proposed, taking into account the rapid and reversible inhibition by ammonium of
influx and the presence of a S/T-X-R/K motif, a target sequence for protein kinase C, located in the hydrophilic C-terminal domain of all NRT2 sequences available so far (Forde, 2000
). Moreover, evidence of post-translational changes that alter the electrophoretic mobility of HvNRT2 proteins on SDSPAGE have been found and these are related to changes in N nutrition (M Hansen, BG Forde, personal communication). The complementation of Atnrt2-A mutant with the wild type or modified HvNRT2 protein will help to evaluate the role of such post-transcriptional modifications on iHATS-mediated
influx.
| Concluding remarks |
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Plants have gathered together in a single organism many different
transport systems that allow them to cope rapidly and easily with the large variations of N availability and to adjust N uptake to growth demand. The complexity of these systems is based on the multiplicity of the structural genes involved and on the different levels of controls that lead from the gene to the presence of an active protein at the membranes (Fig. 3
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The use of a knockout mutant in Arabidopsis or overexpressing plants should help to formulate the beginning of an answer in the near future.
| Acknowledgments |
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We are grateful to Hoai-Nam Truong and Anne Krapp for carefully reading of the manuscript and to Brian Forde for access to unpublished results.
| Notes |
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4 To whom correspondence should be addressed. Fax: +33130833096. E-mail: vedele{at}versailles.inra.fr
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