JXB Advance Access originally published online on July 30, 2004
Journal of Experimental Botany 2004 55(405):2063-2073; doi:10.1093/jxb/erh217
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RESEARCH PAPER |
The gene geranylgeranyl reductase of peach (Prunus persica [L.] Batsch) is regulated during leaf development and responds differentially to distinct stress factors
1Institute of Biology and Agricultural BiotechnologySection of Rome, National Research Council of Italy (CNR), via Salaria km 29,300, I-00016, Monterotondo Scalo, Rome, Italy
2Dipartimento di Ecologia dell'Università della Calabria, Ponte Bucci, I-87030, Arcavacata di Rende, Cosenza, Italy
* To whom correspondence should be addressed. Fax: +39 069 064492. E-mail: giannino{at}mlib.cnr.it
Received 18 February 2004; Accepted 28 May 2004
| Abstract |
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Plant geranylgeranyl hydrogenase (CHL P) reduces free geranylgeranyl diphosphate to phytil diphosphate, which provides the side chain to chlorophylls, tocopherols, and plastoquinones. In peach, the single copy gene (PpCHL P) encodes a deduced product of 51.68 kDa, which harbours a transit peptide for cytoplasm-to-chloroplast transport and a nicotinamide binding domain. The PpCHL P message was abundant in chlorophyll-containing tissues and flower organs, but barely detected in the roots and mesocarp of ripening fruits, suggesting that transcription was related to plastid types and maturation. The message was not revealed in shoot apical meristems, but spread thoroughly in leaf cells during the early stages and was located mainly in the palisade of mature leaves, which exhibited higher transcript levels than young ones. Hence, the transcription of PpCHL P was likely to be regulated during leaf development. Gene expression was monitored in leaves responding to natural dark, cold, wounding, stress by imposed darkening, and during the curl disease. Transcription was stimulated by light, but repressed by dark and cold stress. In darkened leaves, the PpCHL P message was augmented concomitantly with that of CATALASE. In wounded leaves, the message decreased, but recovered rapidly, whereas in curled leaves, a reduction in gene expression was related to leaf damage intensity. However, transcript signals increased locally both in cells mechanically wounded by a needle and in those naturally injured by the pathogenic fungus Taphrina deformans. These data suggest that PpCHL P expression was regulated by photosynthetic activity and was possibly involved in the defence response.
Key words: Geranylgeranyl reductase, leaf development, peach, Prunus persica L., regulation, stress response
| Introduction |
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In plants, phytol (Phy) represents the side chain of chlorophyll (Chl), tocopherols (TP), and phylloquinones (PQ) and is necessary for their integration into plastid membranes (Soll et al., 1980
TP and PQ are antioxidant compounds which shield plants from ageing and photo-oxidative processes (Niyogi, 1999
; Munnè-Bosch and Alegre, 2002
). They also constitute vitamins E and K, respectively, and affect the nutritional value of fruits (Valk and Hornstra, 2000
), their stability in the post-harvesting cold chain, and shelf life (Goffman and Bohme, 2001
). Therefore, the genes affecting the synthesis of these compounds, such as CHLP (Havaux et al., 2003
), may be useful tools as expressed markers in breeding programmes or genetically manipulated to improve traits of fruit quality (Shintani and Della Penna, 1998
).
Genes coding for CHL P have been characterized in prokaryotes (Bollivar et al., 1994
) and a few herbaceous species such as Arabidopsis (Keller et al., 1998
) and tobacco (Tanaka et al., 1999
), but not from any fruit tree species so far. Patterns of gene expression were previously compared in peach leaves at distinct developmental stages (Giannino et al., 2000
) and a cDNA fragment was selected as more abundant in mature than young leaves and the deduced product shared a high homology with plant geranylgeranyl reductases. Some structural features of PpCHL P are described here, and the leaf message during development and in response to light is monitored. Moreover, to test a possible PpCHL P involvement in antioxidant mechanisms of defence, the transcript abundance and localization were determined in leaves subjected to abiotic stresses and attack by the pathogenic fungus Taphrina deformans.
| Materials and methods |
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Plant material and growth conditions
The adult plant OP16 (open pollinator 16, Prunus persica cultivar Chiripa) was seed-derived and chosen as the starting material. OP16 seeds were germinated in vitro and two clonal lines were micropropagated according to Gentile et al. (2002)
Stress assay conditions
In light-response experiments, 6-month-old seedlings, grown at 25 °C, 16/8 h of light/dark, and a light intensity of 100 µmol m2s1 of photosynthetically active radiation (PAR) were tested. Batches of fully expanded leaves (FEL) were sampled 1, 3 or 7 h after dark induction and 1 h after light restoration.
The outdoor plants were pruned in the vase shape, consisting of three branches each 120° distant from the next. After the vegetative burst (from March onwards) the main branches got prolonged and bore secondary shoots on both the mature (woody) segment and the herbaceous extension. With regard to imposed dark assays, FEL of secondary shoots borne at the mid and distal positions (7th and 15th nodes, respectively) of primary branches were wrapped with aluminium foil so as to form an air chamber around them. This was done at 09.00 h on sunny days in May, subsequently leaves were sampled at 21.00 h, after 36 h of treatment. FEL from distinct shoots of one mother plant were collected and the experiment was repeated with two other mother plants. The aluminium foil was chosen so as to allow a partial transpiration of leaves and enhance light reflection (instead of black mittens or cloth) and mitigate heat stress phenomena. The leaf temperature of four wrapped and untreated leaves was measured using a leaf clip holder placed at the centre of the lamina and connected to a MINI-PAM photosynthesis yield analyser (Meinn Walz, Germany). Measures were carried out at 13.00 h and 21.00 h (28 h and 36 h after treatment, respectively). Regardless of their position, the wrapped leaves (WL) exhibited an average increase of c. 1.4 °C compared with controls (CL). At 13.00 h, air temperature was 23±0.2 °C, basal WL was 20.9±0.3 °C (standard error), basal CL was19.5±0.1 °C; apical WL was 21.8±0.4 °C; apical CL was 20.4 ±0.1 °C. At 21.00 h, air temperature was 17±0.2 °C, basal WL was 17.4 ±0.2 °C, basal CL was 15.8±0.4 °C; apical WL was 17.5±0.1°C; apical CL was 15.7±0.3 °C. Sampling was done at 21.00 h (36 h after treatment) as it was considered that CHLP was down-regulated, and such a pattern of expression was used as the control. WL did not appear chlorotic, wilting or flabby, although partially folded symmetrically with respect to the central vein, and just as green as CL.
In wounding assays, FEL of secondary shoots were injured by tweezers in the morning of a sunny day (June). FEL from distinct shoots of one mother plant were pooled and collected 1, 2 or 4 h after injury. Controls were untreated leaves collected at the comparable time after wounding. As for in situ experiments, leaves borne at the shoot apex were gently scarified with a thin needle and sampled after 24 h.
In cold-treatment experiments (May), 1-year-old potted plants (no flower buds) were moved from outdoors and acclimated in growth chambers for 1 week at 22 °C, 16/8 h of light/dark with light intensity as indicated above. Subsequently, the temperature was rapidly lowered to 4 °C and FEL were sampled from primary and secondary shoots after 24 h and 48 h. Leaves of acclimated plants before the treatment were collected as control samples.
Southern blot analysis
The technique was performed as previously described (Giannino et al., 2000
). Filters were hybridized at 62 °C, washed twice (2x, 1x, SSC/0.1%SDS) at 60 °C for 10 min and exposed to Biomax films (Kodak) for 412 h at 80 °C. The probe spanned the 11661578 cDNA nucleotide stretch.
Northern blot analysis
RNA isolation was reported in Giannino et al. (2000)
, and 7 µg was loaded in northern blots according to Sambrook et al. (1989)
, using formamide/formaldehyde gel electrophoresis. Filters were hybridized at 42 °C in formaldehyde containing buffer o/n (Ultrahyb, Ambion) and washed twice (2x, 1x, SSC/0.1%SDS) at 42 °C for 10 min, then washed once (0.1x SSC/0.1%SDS) for 50 min at 50 °C, then exposed to Biomax films (Kodak) for 4 h at 80 °C. The CHL P probe was the same as for Southern blots. The CATALASE probe spanned the stretch 223-829 (accession no. AJ496418.1) and in some cases two signal bands were detected; the 1.8 kb signal was attributed to CATALASE 1 (Bagnoli et al., 2004
). The 18S RNA probe spanned the stretch 4851211 (accession no. L28749.1). The optical density of signal bands was determined according to the ID Image Analysis Software (Kodak Digital ScienceTM) and relative gene expression was represented in histograms (Ms Excel program) as the optical density ratio between the tested gene and 18S r-RNA.
Isolation and sequence analysis of cDNA and genomic clones
A 445 base pairs (bp) fragment was cloned after DDRT-PCR experiments performed on RNA of adult and young leaves using a decamere FW3 (5'-GGAGAAGTGGG-3') and an oligo dT (Giannino et al., 2000
). To achieve the full length PpCHL P: a 940 bp fragment was cloned using FW1 (5'-AAGATGGACAACTGTAAGCC-3'), designed on conserved stretches of soybean and arabidopsis, and BW1 (5'-CCTTCTGCAACACATCCAACAC-3'), located within the 3' region; then a 523 bp transcript was cloned, using BW5 (5'-CCCATTCTCACTCGCCCTGTTCC-3') to reverse transcribe RNA from leaves in 5' RACE experiments (In Vitrogen). The primer combinations FW0 (5'-GCTCCGACCCAAAAAAAAATGGCTTCC-3')/BW5 and FW1/BW3 (5'-CCATCTCCCTCCTAAGTGC-3') were used to screen for introns. PCR components were: genomic DNA (200 ng) and/or cDNA (2 µl), 1 µM of each primer, 0.5 mM dNTPs, Taq DNA polymerase (TaqQUIA, Quiagen) 2.5 U, 1/10 of 10x Taq buffer, 2.5 mM MgCl2, in a final volume of 50 µl. PCR conditions: starting cycle at 95 °C for 3 min; 35 cycles at 95 °C for 1 min, either 58 °C (in cDNA based and RACE-PCR experiments) or 62 °C (with genomic DNA) for 90 s and 72 °C for 90 s, final extension at 72 °C for 5 min. All PCR fragments were cloned into pGEM-T vector system (PROMEGA) and sequenced by the ENEA service, Rome.
In situ hybridization
Excised tissues were fixed, dehydrated, embedded in paraffin, cut into 8 µm sections and hybridized (55 °C) to a digoxygenin-labelled antisense RNA probe as described by Cañas et al. (1994)
. A cDNA clone spanning the 3' PpCHL P cDNA stretch (11661578) was linearized by the endonuclease SpeI and the digoxygenin-labelled RNA probe was generated by T7-polymerase driven in vitro transcription (Giannino et al., 2000
).
| Results |
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The peach CHLP full-length cDNA and its deduced product
The full-length cDNA (AY230212 [GenBank] ) of PpCHL P consisted of 1621 bp with an ORF of 1401 bp encoding a deduced polypeptide of 466 amino acids. A stretch of eight adenines (3239), a pyrimidine rich tract (831), and a stop codon (57) in frame with the ATG start were scored within the 5' UTR, whereas a canonical polyadenylation signal spanned the 15791584 stretch in the 3' UTR.
The deduced protein PpCHL P (Fig. 1A) was 51.68 kDa (BioEdit Alignment Sequence Editor) and exhibited the maximal identity with Glycine max (81%), followed by Nicotiana tabacum (79%), Arabidopsis thaliana (76%), Mesembryanthemum cristallinum (76%), and Oryza sativa (53%). The transit peptide (tp) for cytoplasm-to-chloroplast transport (156) was assigned by using the Chlorop 1.1 Server (http://www.cbs.dtu.dk/services/) and the mature product of 410 amino acids was estimated as 45.57 kDa. Within the highly variable region of tp, the GLRQ group (1114) and a few other residues (Fig. 1A) were tightly conserved. The GXGXXG motif which is associated with the binding of nicotinamide nucleotides was assigned within the stretch 5385 (Atta-Asafo-Adjei et al., 1993
). From the group LRVAV onwards (6169), peach CHL P was highly homologous to these species (ClustalW and Genedoc programs) and a phylogram (Fig. 1B) was constructed by clustering regions devoid of tp. Plant CHLPs fell into a unique and highly supported monophyletic group, branch length of peach CHL P (0.07) was closest to that of A. thaliana, whereas the enzyme of rice diverged from dicotyledonous species.
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Genomic organization
The leaf genomic DNA of peach, almond (Prunus amygdala), sweet cherry (Prunus avium), and plum (Prunus dulcis) was endonuclease-restricted, size-fractionated, transferred onto a nylon membrane and hybridized with a radiolabelled probe spanning the 3' UTR of PpCHL P cDNA (Fig. 2). The full-length cDNA (and the probe) did not contain sequences recognized by the endonucleases (Fig. 2A). As for peach, one band was signalled in all restrictions, suggesting the occurrence of one gene copy. A one band pattern was also observed in plum, whereas in almond and cherry the signal number varied from one to two bands. The latter profile could be due to the occurrence of either multiple CHL P copies or enzyme recognition sites which were absent in the peach gene. The neat bands suggested that CHL P genes of these species (subfamily: Drupoideae) shared a high degree of homology at the nucleotide level.
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In order to search for introns, PCR experiments were performed on genomic DNA of peach, plum, and cherry with primer couples designed along the PpCHL P cDNA (Fig. 2A). As for peach, an intron of 633 bp was located within the ORF (Fig. 2A), exhibited a GT/AG editing motif, and was rich in A/T bases. As for the other species, the intron position was also tightly conserved, though the length varied accordingly (data not shown).
Tissue-specific expression
Total RNA was isolated from several tissues of adult plants and hybridized with the probe mentioned above (Fig. 3). At the end of dormancy period (February), a faint signal was revealed in resting vegetative buds, whereas message became abundant in the apical tips of growing shoots (Fig. 3A). No signal band was found in roots (Fig. 3A), though the message could be revealed by RT-PCR (data not shown), indicating a very low level of expression.
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The PpCHL P transcript was abundant in floral buds before disclosure (February), in sepals, petals, and stamens of open flowers (March) and in green fruits with a diameter of c. 3 cm (May), nearly 40 d after flowering (DAF). Mesocarp (pulp) and pericarp (skin) were sampled during fruit maturation (10 cm average diameter) at 110, 118, and 125 DAF. The message (Fig. 3B) was more abundant in fruits at 110 DAF (green pericarp) than in the ripening stages.
PpCHL P is regulated during leaf development
Northern analysis was performed on leaves collected from distinct shoots exhibiting a similar length and the same number of internodes. Sampled leaves were then grouped into three classes based on both the length of the mid-vein and blade folding: small and unfolded (up to 5 cm), medium and expanded (between 6 and 12 cm), large and fully expanded (over 12 cm). The PpCHL P message was most abundant in large FEL, followed by medium and small ones (Fig. 4A). The message was also localized by in situ hybridization in both apical tips of growing shoots, unfolded and fully expanded leaves. As for apical tips, the message was detected in leaves surrounding the apex, but not in the meristematic dome (Fig. 4B). In unfolded leaves, the transcript was uniformly spread in mesophyll cells (Fig. 4C), whereas they were abundant and mainly confined to the palisade cell layer in FEL (Fig. 4D). In both leaf types, message was undetected either in vascular bundles or along the epidermis (Fig. 4C, D).
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Response to light and forced dark
The levels of PpCHL P transcript were first monitored in leaves of plants kept under a cycle of 16/8 h light/dark (Fig. 5A) and compared with those of large FEL (Fig. 5B) collected from 06.00 h to 21.00 h from plants growing in the open field in June. The expression of the ribulose biphosphate carboxylase/oxygenase activase gene of peach (named Rubisco activase or RUBCA) was also monitored in order to mark photosynthetic activity. CHL P transcript decreased within 1 h from the start of darkness, maintaining a steady-state during the 7 h of darkness, but the message abundance was rapidly restored within 1 h of light (Fig. 5A). Outdoors, the message increased from early to late morning and decreased during the evening (Fig. 5B).
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Gene expression was also tested in FEL which were obscured by aluminium foil wrapping (see details in the Materials and methods) for 36 h (Fig. 5C). The CHL P transcript appeared more abundant in treated than in control leaves, regardless of their position on the shoot. A similar pattern was observed when RNA was probed with a fragment spanning the ORF of peach CATALASE genes (CAT), used to mark a burst of oxidative stress.
Response to cold treatment and wounding
One-year-old plants were exposed to 4 °C and the message of PpCHL P and RUBCA was observed to decrease within 48 h in FEL borne on primary shoots (Fig. 6A).
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The blades of FEL were injured by tweezers and sampled after 1, 2 or 4 h (Fig. 6B). The CHL P transcript decreased abruptly after the first hour, but it was fully restored within 4 h. The CAT message, used as stress marker, followed an analogue trend as CHL P, although the level at 4 h was greater than that of non-treated leaves. Small leaves were also gently punctured and in situ experiments (Fig. 6C, D) revealed a large abundance of message in the damaged cell areas 24 h after the treatment.
Response to leaf curl disease
The expression of PpCHL P was tested in leaves naturally infected by the fungus Taphrina deformans and showing distinct degrees of damage (Fig. 7AC). In severely affected leaves, the gene was poorly expressed compared with healthy leaves (Fig. 7D). Similarly, transcript appeared less abundant in infected than healthy leaf sectors (Fig. 7D). In situ experiments were performed on leaf portions which included green and red curly sectors (black box in Fig. 7C). The signal featured in the palisade of intact sectors, it was quite intense in cell areas with lesions and absent in chlorotic sectors (Fig. 7E, F).
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| Discussion |
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The nuclear CHL P of peach harbours an ORF of 1401 bp and encodes a chloroplast targeted polypeptide of 51.68 kDa, while the chloroplastic form is estimated at 45.5 kDa. In the 5' UTR, a pyrimidine-rich tract (PRT) featured, recalling that of animal 5' TOP genes (Terminal OligoPyrimidine), which plays a regulatory role during translation (Amaldi and Pierandrei-Amaldi, 1997
As for genomic organization, CHL P is a single copy gene in peach and plum just as in A. thaliana (TAIR blast no. AT1G74470.1), whereas small member families are not excluded in cherry and almond. The CHL P members of the four Drupoideae species share a common high homology and keep the intron position strictly conserved within the group and with respect to A. thaliana and soybean (accession no. AAD28640.1). This may have significance in the regulation of gene transcription and suggests a common ancestor for the species. In peach, the occurrence of a single copy is supported by both Southern analysis and the absence of transcript polymorphism of several messages that were sequenced from distinct tissues. Due to its multi-functionality and weak hydrophobicity, a unique CHL P enzyme has been proposed to be recruited in metabolic pathways which occur in distinct plastidial structures (Keller et al., 1998
). Thus, subcellular specificity may be conferred by post-translational modification rather than by transcript diversity. In support of this, the transit peptide of the nucleus-encoded chloroplastic LHCP protein is not necessary for intra-organelle positioning, since LHCP itself harbours a signal for membrane-specific localization (Lammpa, 1988
).
Gene expression analysis shows that the PpCHL P transcript is confined to tissues exposed to light and containing plastids such as chloroplasts and chromoplasts. As for photosynthetic tissues, PCHL P appears developmentally regulated since transcripts were detected in forming leaves, but not in vegetative SAMs, and their abundance increased in accordance with leaf size and development. The average content of chlorophyll is related to the size of peach leaves (Merlo and Passera, 1991
); therefore, it is likely that the higher level of PpCHL P expression in mature as opposed to young leaves could be related to the increase of chlorophyll synthesis and turnover. In addition, message appeared spread thoroughly in mesophyll cells of uncurled leaves, whilst it was abundant and mainly located in the palisade layer of FEL. Overall, these data strongly suggest that PpCHL P expression is related to chloroplast maturation and photosynthesis. Consistent with this, PpCHL P expression was also triggered by light: message abundance increased from morning to afternoon, diminished with the onset of darkness and was maintained at steady levels during the night. A similar pattern of expression was described for RUBCA in apple (Watillon et al., 1993
), suggesting that PpCHL P expression is regulated by the photosynthetic activity.
In cold-stressed leaves, the PpCHL P and RUBCA expression diminished. Photosynthetic efficiency is negatively affected in plants exposed to cold, especially if associated with high light (Savitch et al., 2001
). However, in this work, plants were not tested under these combined stress conditions, which are also reported to prompt tocopherol synthesis synergistically (Wise and Naylor, 1987
).
In severely wounded leaves, the PpCHL P transcription decreased immediately and drastically, but was fully restored within 4 h. The triggering of the CAT transcript also occurred 2 h after treatment, marking the occurrence of oxidative burst phenomena (Guan and Scandalios, 2000
). It is speculated that the damage to the photosynthetic apparatus may cause degradation and/or leakage of PpCHL P substrate and activate feedback mechanisms that down-regulate gene expression. However, the restoring of PpCHL P expression occurs rapidly within the process of damage repair, which includes de novo synthesis of both chlorophyll and side chains of anti-oxidant compounds. In addition, message signals were more intense in injured than unaffected cells after inferring localized scarification to leaves. In plants, the increase in the levels of lipid hydroperoxydes were monitored after wounding up to 120 min and related to cytological events occurring up to 24 h (Fabbri et al., 2000
). Hence, the local accumulation of PpCHL P transcript may play a role in TP synthesis necessary to protect lipid membranes from peroxidation as observed in photoprotection mechanisms (Havaux et al., 2003
).
In aluminium-foil-obscured leaves a slight increase of temperature (c. 1.4 °C) was measured, while the PpCHL P expression was triggered alongside that of CAT compared with controls. In the latter, the CAT1 message was less abundant at 21.00 h and this was consistent with CAT1 down-regulation associated with natural dark (Bagnoli et al., 2004
). Increased levels of CAT were also detected in senescing leaves of Brassica napus (Buchanan-Wollaston, 1997
), while several stress oxidative enzymes are triggered in mitten-darkened leaves of Arabidopsis, which undergo rapid senescence (Weaver and Amasino, 2001
). In addition, the oxidative stress associated with plant ageing occurs in chloroplasts, accompanied by decreased levels of chlroplastic ß-carotene and
-tocopherol (Munnè-Bosch and Alegre, 2002
). In this context, the hypothesis that the PpCHL P response may have a role in the synthesis of anti-oxidant compounds during oxidative stress and/or senescence is supported.
In leaves affected by the curl disease, the abundance of the PpCHL P message decreases in both chlorotic sectors and in necrotic leaves. This is consistent with the diminishment of chlorophyll a+b content (Montalbini and Buonaurio, 1986
) and the net reduction of photosynthesis rate documented for infected leaves (Raggi, 1995
). However, in situ analysis viewing healthy and damaged sectors revealed that transcripts accumulated in damaged as well as in neighbouring cells. These interact with the parasite which is reported to deliver auxin and cytokinin in axenic cultures and to induce the accumulation of IAA and cytokinins in curled leaves (Perley and Stowe, 1966
; Johnston and Trione, 1974
; Sziràki et al., 1975
; Yamada et al., 1990
; Bassi et al., 1984
). Plant responses to biotic and abiotic stresses exploit overlapping metabolic pathways, in which lipid peroxides, reactive oxygen species, and subsequent metabolites (e.g. jasmonate and traumatic acids) play several roles (Baron and Zambryski, 1995
; Ebel and Mithöfer, 1998
; Liechti and Farmer, 2002
). The in situ pattern of the PpCHL P transcript at the level of fungus-damaged cells shares many similarities with that observed in punctured cells. These patterns lead to the hypothesis that PpCHL P may play a role in the metabolism of antioxidant/defence compounds to protect the membrane lipids of chloroplasts (Grasses et al., 2001
; Havaux et al., 2003
).
To sustain these hypotheses on PpCHL P functions, an antisense technology would be helpful, and virus-induced gene silencing (VIGS) approaches are being tested (Ratcliff et al., 2001
). VIGS allows traditional A. tumefaciens-mediated transformation to be bypassed, to which peach is more recalcitrant than its related species (Scorza et al., 1990
; Gentile et al., 2002
). In the authors' laboratories, PpCHL P was included in a set of markers which monitor photosynthesis efficiency to select the healthiest clones in programmes of micro-propagation. Moreover, since PpCHL P was observed to decrease with cold stress and during fruit maturation, probing varieties' genomes and RNA with CHL P may become a useful tool to screen for those genotypes responding best to cold. Finally, the constitutive or tightly controlled expression of exogenous CHLP copies via gene transfer technology may impact on the plant response to mechanical injury (e.g. hail), pathogen attacks, and during fruit shelf life.
| Acknowledgements |
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This work was supported by MIPAF of Italy, Piano Nazionale Biotecnologie Vegetali (CNR programme 360, Area 4.2.8) and by the EU project FAIR CT 961445. We are grateful to Dr Damiano Carmine (Institute for Fruit Tree Culture of MiPAF, Rome) for providing plant material, to Dr Giovanna Frugis (Institute of Biology and Agricultural Biotechnology, Rome) for suggestions and critically reading this manuscript, and to Professor Milvia Luisa Racchi (Section of Genetics, Department Agricultural Biotechnology, University of Florence) for providing a CAT probe.
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