JXB Advance Access originally published online on August 30, 2005
Journal of Experimental Botany 2005 56(420):2601-2609; doi:10.1093/jxb/eri252
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RESEARCH PAPER |
In higher plants, only root mitochondria, but not leaf mitochondria reduce nitrite to NO, in vitro and in situ

1Lehrstuhl Botanik I, Julius-von-Sachs-Institut für Biowissenschaften, Universität Würzburg, Julius-von-Sachs-Platz 2, D-97082 Würzburg, Germany
2Plant Science Department, University of Manitoba, Manitoba, MB R3T 2N2, Canada
To whom correspondence should be addressed. Fax: +49 931 888 6158. E-mail: kaiser{at}botanik.uni-wuerzburg.de
Received 30 March 2005; Accepted 20 June 2005
| Abstract |
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At oxygen concentrations of
1%, even completely nitrate reductase (NR)-free root tissues reduced added nitrite to NO, indicating that, in roots, NR was not the only source for nitrite-dependent NO formation. By contrast, NR-free leaf slices were not able to reduce nitrite to NO. Root NO formation was blocked by inhibitors of mitochondrial electron transport (Myxothiazol and SHAM), whereas NO formation by NR-containing leaf slices was insensitive to the inhibitors. Consistent with that, mitochondria purified from roots, but not those from leaves, reduced nitrite to NO at the expense of NADH. The inhibitor studies suggest that, in root mitochondria, both terminal oxidases participate in NO formation, and they also suggest that even in NR-containing roots, a large part of the reduction of nitrite to NO was catalysed by mitochondria, and less by NR. The differential capacity of root and leaf mitochondria to reduce nitrite to NO appears to be common among higher plants, since it has been observed with Arabidopsis, barley, pea, and tobacco. A specific role for nitrite to NO reduction in roots under anoxia is discussed. Key words: Alternative oxidase, anoxia, cytochrome c oxidase, nitric oxide, NO, root mitochondria
| Introduction |
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In the past decade, the biosynthetic origin and physiological significance of NO in plants have gained increasing attention (Beligni and Lamattina, 2001
Roots, quite in contrast to leaves, are often exposed to hypoxic or anoxic conditions during soil flooding periods. Anoxic plant tissues reduce nitrate to nitrite at a high rate, yet are largely unable to reduce nitrite further to ammonia (Stoimenova et al., 2003
). In consequence, anoxic roots accumulate and excrete nitrite. Therefore, one may expect a most significant reduction of nitrite to NO by NR or related nitrite-dependent sources in flooded, nitrate-fertilized roots. In that context it seems interesting that nitrate fertilization has long been known to improve the survival of plants in flooding periods, and recently it has been shown that nitrate reduction decreased fermentation (Stoimenova et al., 2003
).
Using crude extracts and purified plasma membranes of tobacco roots, Stöhr and colleagues reported a new membrane-bound enzyme that also appeared to be involved in NO formation from nitrite. This enzyme required reduced cyt c as an electron donor and had a pH optimum of 6.1. It was designated as nitrite-NO oxidoreductase (NI-NOR, Stöhr et al., 2001
; Stöhr and Ullrich, 2002
; Meyer and Stöhr, 2004
).
Mitochondria might be another source for NO. Mammalian mitochondria reduce nitrite to NO (Kozlov et al., 1999
), and in the unicellular green alga Chlorella sorokiniana, mitochondria contribute to NO production (Tischner et al., 2004
). Purified mitochondria from tobacco suspension cells were also able to reduce nitrite to NO at the expense of NADH under anoxic conditions, but not in air (Planchet et al., 2005
). In the following, this activity of plant mitochondria is investigated in more detail. It is shown that, probably in all higher plants, only root mitochondria, but not leaf mitochondria are able to reduce nitrite to NO, both in vitro (isolated mitochondria) and in situ.
| Materials and methods |
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Plant material
Wild-type (WT) plants and a nia 30 double mutant of Nicotiana tabacum cv. Gatersleben were cultivated in a vermiculite/sand mixture (2 parts vermiculite/1 part sand) for 23 weeks and from then on hydroponically for a further 34 weeks. Plants of growth stage 57 weeks that were selected for similar size were used for the experiments. During the sand/vermiculite phase plants were watered with full-strength nutrient solution twice a week. The full-strength nutrient solution for nitrate-grown plants contained: 5 mM KNO3, 1 mM CaCl2, 1 mM MgSO4, 0.025 mM NaFe-EDTA, 1 mM K2HPO4, 2 mM KH2PO4, and trace elements according to Johnson et al. (1957)
,
, and
of full-strength) to full-strength nutrient solution. If not stated otherwise, experiments were made with plants or roots harvested 6 h into the light phase. Seeds were surface-sterilized with a mixture of Tween detergent (0.05%) and H2O2 (0.015%) and washed four times with distilled water. Seeds were watered and kept on wet filter paper for 48 h. Germinated seedlings were transplanted into 2.0 l hydroponic pots and cultivated under the same conditions as described for tobacco. In the case of potato tubers and cauliflower, fresh materials were purchased from a local gardener.
Preparation of root segments and leaf slices
Root segments:
After a quick rinse with deionized water, root systems were carefully spread on a glass plate and gently blotted with tissue paper. One gram of the lowest 23 cm of the secondary and tertiary roots (including the root tips) were set aside, cut into 5 mm segments and submerged in a glass vessel containing 10 ml 20 mM HEPES-KOH, pH 7.0, 5 mM KNO3 (or 5 mM NH4Cl, respectively) and 50 mM sucrose. Sucrose was added to make sure that no carbohydrate starvation took place.
Leaf slices:
Freshly harvested leaves were double rinsed with deionized water and cut into 1 cm long and 13 mm wide segments, avoiding the mid-rib portion. The leaf segments (1 g FW) were vacuum infiltrated for 23 min in 10 ml 25 mM HEPES-KOH pH 7.4 and 0.5 mM CaSO4. After infiltration, segments were washed once and subsequently suspended in the same buffer for the NO measurements.
Purification of mitochondria from different tissues
The isolation procedure followed previously published methods (Nishimura et al., 1982
; Vanlerberghe et al., 1995
), with slight modifications. All procedures were carried out at 4 °C. Roots (2530 g FW) were sliced. In the case of leaves, 3040 g of leaves were cut in to slices avoiding the mid-rib portion. In the case of potato, 100150 g of potato tubers were chopped after removing the corky peel. With cauliflower, the outer 1 cm tissue from several florets were sliced. The tissues were equally homogenized with an Ultra Turrax (IKA, Janke and Kunkel, Germany) in 250 ml of homogenization medium containing 0.3 M sucrose, 100 mM HEPES pH 7.6, 0.1% (w/v) defatted milk powder, 0.6% PVP (w/v), 1 mM EDTA, 2 mM MgCl2, 4 mM cysteine, 5 mM KH2PO4, and a ready-to-use protease cocktail (Complete, Roche, Mannheim, Germany, 1 tablet in 100 ml medium). The homogenate was filtered through several layers of cheesecloth. The filtered cell extract was centrifuged at 1000 g for 15 min, and the supernatant was centrifuged again at 10 000 g for 20 min. The resulting pellet was suspended in 4 ml of suspension medium containing 20 mM HEPES pH 7.6, 0.3 M sucrose, 0.1% (w/v) defatted milk powder, 2 mM MgCl2, 1 mM EDTA, and 0.5 mM KH2PO4. The mitochondria were further purified on a discontinuous Percoll gradient composed of the following steps (bottom to top): 3 ml of 60% (v/v), 4 ml of 45% (v/v), 4 ml of 28% (v/v), 4 ml of 5% (v/v), all containing 250 mM sucrose, 20 mM HEPES pH 7.6, and 0.1% defatted milk powder. The mitochondria (4 ml) were layered on top, and the gradient was centrifuged at 30 000 g for 30 min. The mitochondrial fraction appeared at the interface between the 45% and 28% (v/v) layer and was collected, diluted in 8 ml suspension medium, centrifuged (17 000 g, 10 min), and resuspended twice in 8 ml, in order to remove Percoll. The final mitochondrial pellet was suspended in 8 ml medium. Mitochondrial respiration was followed polarographically at 25 °C in 2 ml suspension medium containing 0.5 mg protein and in addition 0.5 mM ADP and 0.5 mM Pi. Oxygen uptake was started by addition of 0.5 mM NADH (10 mM), if not mentioned otherwise. Protein content of the resuspended mitochondrial pellet (free of milk powder) was determined using the BCA protein assay reagent (Pierce, Rockford, Illinois, USA).
Catalase activity in different fractions of the Percoll gradient was determined by following the oxygen evolution after addition of 20 mM H2O2. A blank (medium without fractions) was always performed but gave usually no measurable oxygen evolution.
NR activity was measured in aliquots (0.11 ml) of the different fractions of the Percoll gradient and in the supernatant of the 10 000 g fraction following standard procedures described previously (Planchet et al., 2005
).
Measurement of NO by chemiluminescence
The vials containing root segments or leaf slices (1 g FW in 10 ml buffer), or mitochondrial suspensions (1.52.5 mg protein in 8 ml buffer) were immediately placed in a glass cuvette (1.0 l air volume) which was mounted on a rotary shaker (150 U min1). A constant flow of measuring gas (purified air or nitrogen) of 1.6 l min1 was pulled through the cuvette, through a cold moisture trap and subsequently through the chemiluminescence detector (CLD 770 AL ppt, Eco-Physics, Dürnten, Switzerland, detection limit 20 ppt; 20 s time resolution) by a vacuum pump connected to an ozone destroyer. The ozone generator of the chemiluminescence detector was supplied with dry oxygen (99%). The measuring gas (air or nitrogen) was made NO free by conducting it through a custom-made charcoal column (1 m long, 3 cm internal diameter, particle size 2 mm). Calibration was routinely carried out with NO free air (0 ppt NO) and with various concentrations of NO (135 ppb) adjusted by mixing the calibration gas (500 ppb NO in nitrogen, Messer Griesheim, Darmstadt, Germany) with NO-free air. Flow controllers (FC-260, Tylan General, Eching, Germany) were used to adjust all gas flows. Air temperature in the cuvette was 25 °C. The cuvette's lid was custom-made to allow the injection of various solutions through a serum stopper directly into the sample without opening the cuvette or interrupting shaking cycles. The same system was used with leaf slices and mitochondria suspensions. NO analyser data were logged into a computer and processed using customized Visual designer based software (Intelligent Instrumentation Inc., Tucson, USA).
NO scavenging by mitochondria
To check scavenging of NO by mitochondria, a solution containing a defined amount of NO was prepared by flushing 10 ml distilled water with gas containing 95 ppm NO in nitrogen. According to the solubility of NO in water at atmospheric pressure (1.9 µmol ml1), the NO concentration in the solution was 180 pmol ml1. Aliquots (2 ml) of this NO solution were injected into 10 ml of water, mitochondrial buffer alone or buffer with mitochondria (1.52.5 mg protein in 10 ml buffer). All solutions were stirred in a head space cuvette flushed continuously with purified air or nitrogen, as indicated. Immediately after injection the NO starts to escape from the stirred solution into the gas phase, where its concentration was continuously measured for 20 min until NO emission came to an end. Integration of the emission curve revealed the total amount of NO recovered. In order to determine whether NO scavenging by mitochondria (in air or nitrogen) would be different under respiratory or non-respiratory conditions, scavenging was also compared with or without the addition of 1 mM NADH.
| Results |
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Root segments of WT tobacco (grown hydroponically on nitrate as the N-source) usually released very little or no NO in air (Fig. 1A). After switching to nitrogen, however, the NO concentration in the gas stream increased, reaching a steady-state after approximately 30 min, where the rate of the anoxic NO release was about 9 nmol g1 FW h1 (Fig. 1A). The mean NR activity in corresponding root extracts was about 1 µmol g1 FW h1 (not shown). Thus, NR could produce nitrite at about a 100-fold higher rate than required for the measured NO release. Nitrate reductase (NR)-free root segments (either from a nia 30 double mutant (Fig. 1A, B) or from WT plants grown on ammonia as the N source plus tungstate (Fig. 1B), did not emit NO, either in air or under anoxia, which was originally interpreted to indicate that NR was the only NO source (Rockel et al., 2002
|
Mitochondria were isolated from roots of hydroponically grown WT tobacco (Fig. 2B) and also from roots of a nia double mutant (Fig. 2C). Like root segments, mitochondrial suspensions supplied with NADH and nitrite emitted NO under anoxia, but not in air (Fig. 2). Consistent with our previous observations with heterotrophic tobacco cell suspensions (Planchet et al., 2005
|
The Km for nitrite and the I50 for oxygen for mitochondrial NO emission were also determined. Under anoxia, the Km for nitrite of purified mitochondria was about 175 µM (Fig. 3A) and for root segments it was 210 µM (Fig. 3B), which is within the range of the Km for nitrite of NO production by purified NR (100300 µM; Rockel et al., 2002
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While quantitative data on NO emission by roots are rare, NO production by leaves has been frequently demonstrated (see Introduction). Specifically, it has been shown that NR-free nia mutant leaves or NR-free tobacco cell suspensions do not emit NO (Planchet et al., 2005
|
In order to check whether the above-described differential function of leaf and root mitochondria was unique for tobacco, nitrite-dependent NO production of other species was examined, both with leaf and root slices as well as with mitochondria purified from leaves and roots. In Fig. 6, leaf slices from nitrate-grown barley (Fig. 6A) and pea (Fig. 6B) produced even higher amounts of NO under anoxia than tobacco leaf tissues. Leaf slices from ammonium-grown plants, which do not express NR in leaves, emitted almost no NO even when fed with nitrite (Fig. 6A, B). Consistent with that, mitochondria purified from young barley (Fig. 6C) or pea (Fig. 6D) leaves emitted only very little NO when fed with nitrite plus NADH. Similar results were obtained with leaf slices and mitochondria from Arabidopsis (not shown separately). In contrast to leaves, root segments from barley (Fig. 7A) and pea (Fig. 7B) grown on ammonium produced NO at rates comparable with those of tobacco root segments (Fig. 1), with slightly different kinetics. Importantly, unlike leaf mitochondria, root mitochondria purified from barley (Fig. 7C) and pea (Fig. 7D) also emitted NO when fed with nitrite and NADH, just like root mitochondria from tobacco. Again, root segments and mitochondria purified from Arabidopsis roots gave similar data as those from the three other species (not shown separately).
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The above results indicate that leaf mitochondria either lack a nitrite reductase-like activity, or they might have a very strong capacity to scavenge NO. In order to test for the latter possibility, the following experiment was carried out: mitochondria were isolated from barley leaves and roots. First, both preparations were tested separately for their ability to reduce nitrite to NO. Expectedly, NO emission by root mitochondria was 15 nmol mg1 protein h1, and by leaf mitochondria it was zero. In a 1:1 mixture of root and leaf mitochondria, it was 7.5 (not shown). Thus, there was no scavenging by leaf mitochondria of NO produced by root mitochondria.
The NO scavenging by isolated mitochondria in nitrogen and air was also compared using a method similar to one previously published by Shiva et al. (2001)
. Distilled water was brought into equilibrium by flushing with NO gas (usually 500 ppb) in nitrogen. An aliquot of that freshly prepared solution was injected using a gas-tight syringe through a serum stopper into a suspension of mitochondria shaking under nitrogen in the headspace cuvette. When NO was injected into pure water, NO emission started immediately, reached a peak value after a few minutes and then declined to zero. The total amount of NO emitted was more than 90% of the added NO. By comparison, recovery of NO from a mitochondrial preparation was much less, about 17%; but at least part of the total scavenging was due to a reaction of NO with the buffer used for the mitochondria (Fig. 8). In nitrogen, NO scavenging by all systems was only slightly less than in air. Also, when the mitochondria were supported with NADH as electron donor, NO scavenging was only slightly increased (Fig. 8).
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In order to accomplish the above comparison of non-green root tissues and green leaf tissues, mitochondria were also isolated from non-green cauliflower and from potato tubers. In both cases, oxygen uptake rates (on a protein basis) were in the range of the above experiments (57 µmol O2 mg1 protein h1), yet their rates of NO emission were below 0.25 nmol g1 FW h1 (data not shown).
| Discussion |
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Root tissues, as well as mitochondria isolated from roots, were obviously able to reduce nitrite to NO via mitochondrial electron transport. This also indicates that nitrite at the concentrations used was able to enter cells and mitochondria in situ. The apparent NO production rate was extremely low in air, and much higher under hypoxia/anoxia. This behaviour is in marked contrast to that of purified NR, where nitrite to NO reduction was only slightly increased by anoxia (Planchet et al., 2005
The sensitivity of NO production to the complex III inhibitor, Myxothiazol, and to the AOX inhibitor, SHAM, suggests that both terminal oxidases (CytOx and AOX) may participate in NO production, in confirmation of previous data obtained with a green alga (Tischner et al., 2004
) or mitochondria purified from tobacco suspension cells (Planchet et al., 2005
). Whether an additional nitrite-NO reductase protein is involved, or whether this activity is inherent to the terminal oxidases themselves is not clear yet.
According to the above data and to literature, a mitochondrial nitrite:NO reductase activity now appears to exist in bacteria, green algae, higher plants, and animals (Kozlov et al., 1999
; Tischner et al., 2004
; Planchet et al., 2005
). Considering the fact that this activity covers such a wide range of organisms, including photoautotrophic algal cells, it is even more surprising that leaf mitochondria were not able to produce NO from nitrite. Whether that is due to a different property of leaf and root terminal oxidases, or to the absence from leaf mitochondria of an additional nitrite:NO reductase protein associated with the oxidases (see above), is not yet known. However, an absence of NO emission from leaf mitochondria is certainly not due to a specifically high scavenging capacity, as shown.
An obvious question, then, is why do root mitochondria do it but leaf mitochondria do not. Anoxic mammalian mitochondria also produced NO from nitrite (Kozlov et al., 1999
) in a Myxothiazol-sensitive reaction. As mammalian mitochondria synthesize NO primarily via NOS (Giulivi, 1998
), the reduction of nitrite to NO was considered secondary and was suggested to serve for a recycling of NO oxidation products (Kozlov et al., 1999
). This cannot be the purpose of nitrite to NO reduction in plants, where nitrite is a normal intermediate of N-metabolism.
Roots, in contrast to leaves, may frequently experience oxygen deficiency in water-logged soils. Under those conditions, nitrate and nitrite may serve as alternative electron acceptors and may partly replace fermentation for NADH reoxidation during glycolysis, even though electron flow through NR was comparatively low (Stoimenova et al., 2003
). However, the above-described rates for the reduction of nitrite to NO are probably too low to be relevant as an electron sink for the maintenance of a minimum energy metabolism. It was recently suggested (Dordas et al., 2004
; Igamberdiev et al., 2004
) that a haemoglobin cycle would exist in plants that would oxidize NO to nitrate. In that case, a hidden nitrite/NO cycle would maintain a much higher electron flow than suggested by NO emission. This role of plant haemoglobins would correspond to the role played by bacterial flavohaemoglobins (Pool and Hughes, 2000
). However, the haemoglobin cycle is not functional under anoxia. Also, NO has been suggested to be involved in signalling of oxygen concentrations by binding to haemoglobin, and to regulate the citric acid cycle (by inhibiting aconitase) and respiration (by inhibiting CytOX and activating AOX) (Millar et al., 2004
).
A specific property of roots with respect to nitrite-dependent NO production was also suggested by the detection of Stöhr and colleagues (Stöhr et al., 2001
; Stöhr and Ullrich, 2002
; Meyer and Stöhr, 2004
), of a nitrite:NO reductase associated with the PM-bound NR in roots. Thus roots, in contrast to leaves, would even have two separate membrane-bound systems to reduce nitrite to NO. Such redundancy suggests that nitrite-dependent NO formation in roots serves a specific and important purpose. As a secondary messenger, NO appears to trigger cell death in plantpathogen interactions (Delledonne et al., 1998
; Wendehenne et al., 2001
, 2004
) or in differentiating xylem elements (Gabaldon et al., 2005
). In roots and stems of flooding-tolerant plants, hypoxia leads to the differentiation of air-conducting aerenchyma, which may involve the induction of lysigenous cell death. Ethylene biosynthesis also triggers aerenchyma formation. However, the conversion of ACC into ethylene requires oxygen and thus does not work under anoxia. On the other hand, NO production is optimal under anoxia, and thus NO might take over some of the signalling for lysigenous cell death when oxygen is rapidly and completely consumed. While this is speculative at this point, the fact that root and leaf mitochondria are different suggests at least some connection of NO production with specific aspects of root metabolism in relation to hypoxic/anoxic conditions.
The lack of ability of leaf mitochondria to produce NO might somehow be related to photosynthesis. However, nitrite-dependent NO production was also lacking in mitochondria from other non-green tissues like potato tubers and cauliflower inflorescences (not shown). On the other hand, as mentioned above, mitochondria from non-green tobacco cell suspensions reduced nitrite to NO, although with a lower capacity than root mitochondria (on a protein basis). Thus, more work is required to find out what the molecular basis for the observed differences is and which physiological purpose they might fulfil.
| Acknowledgements |
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This work was supported by the DFG (Ka 456/15-2 and Ka 456/16-1). The skilled technical assistance of Maria Lesch is gratefully acknowledged.
| Footnotes |
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* These authors have contributed equally to this work.
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